Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c08
         (913 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...   149   7e-37
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom...    26   6.5  
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    26   8.5  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score =  149 bits (360), Expect = 7e-37
 Identities = 76/206 (36%), Positives = 113/206 (54%), Gaps = 3/206 (1%)
 Frame = -3

Query: 752 KELLFDSGGLCLKKRESMVENRGSMXXXXXXXXXXXXXXXLQVPINVCAVIPICENMVSG 573
           K + FDSGG+ +K  ++M E R  M               L +P+N   V P+ EN+ SG
Sbjct: 280 KGVTFDSGGISIKPSQNMKEMRADMGGAAVMLSSIYALEQLSIPVNAVFVTPLTENLPSG 339

Query: 572 QCMKVGDVVRALNGLSIQIEDTDMEGRLMLADALVYGQAVHKPELVIDVATFTRGVLQAL 393
              K GDV+   NGLS++I++TD EGRL+LADA+ Y  + +K + VI+ +T T  +L AL
Sbjct: 340 SAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVAL 399

Query: 392 GGAACGCYTESEALWRDVTAAGARSGDRAWRLPLWDYYRRQITDDPSVDLRNKGSGKATS 213
           G    G + + E LW+++  A   +GD  WR+P  + Y +Q+T   + DL N        
Sbjct: 400 GNVFTGAFVQGEELWKNLETASHDAGDLFWRMPFHEAYLKQLTSSSNADLCNVSRAGGGC 459

Query: 212 CLGAAFLKSFVC---CSWLHVDTTGV 144
           C  AAF+K F+     S+ H+D  GV
Sbjct: 460 CTAAAFIKCFLAQKDLSFAHLDIAGV 485



 Score = 33.1 bits (72), Expect = 0.056
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 906 VTLEAREREWIXAQNMQAFLTVARXSCEEPIXLECNYRGDKESRPP--VVIAAKGVTF 739
           V +   + +WI  Q M   LTV   S   P  LE  Y G ++S+    + +  KGVTF
Sbjct: 227 VKVFVHDEKWIDEQKMNGLLTVNAGSDIPPRFLEVQYIGKEKSKDDGWLGLVGKGVTF 284


>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 530 LSIQIEDTDMEGRLMLADALVYGQAVHKPELV 435
           +S ++ +   EG L L  AL YGQ    PELV
Sbjct: 76  VSYELSNNANEGSLDLLGALQYGQCQGIPELV 107


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 615 CLRSHTDMREH--GERTVHEGRRRRQSSQRTLHPDRRHGHG 499
           CLR +  + ++   ++ +H+G R R S    L P +  GHG
Sbjct: 175 CLRGYCTVYKYYKWDKLIHDGIRARISQFVILPPFQHQGHG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,967
Number of Sequences: 5004
Number of extensions: 41017
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)