Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c07
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    31   0.27 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    29   1.1  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    28   1.4  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    28   1.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.6  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   7.6  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   7.6  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = -3

Query: 623 SIIQNVVNNLIIDKSRNTMEYCYKLWVGNGQHIVRKYFPYNFRLIMAGNFVKLIYRNYNL 444
           +II   V+N I+D+  +  ++C ++W G     +R ++  N    ++    K IY +   
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYS-NLYKKLSHRDAKSIYHHVRR 305

Query: 443 A 441
           A
Sbjct: 306 A 306


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = -3

Query: 779 VLAVSAGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 615
           V+  +AG+  +   S+   N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/78 (26%), Positives = 32/78 (41%)
 Frame = -3

Query: 752 EMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDKSRN 573
           EM     S  N  LE          D D   R ++  + Q    +++++  NL I  + N
Sbjct: 404 EMGYTQKSIENDMLESFQKGVFRINDLDCLGRTNV-IQYQISRLVLKDIFFNLQIGVTFN 462

Query: 572 TMEYCYKLWVGNGQHIVR 519
            +EY   LW  NG  I +
Sbjct: 463 ILEYLRHLWSNNGDAIAK 480


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 558 AVLHGVPTLVNDQVVNYILDDGALALVLVFQALTD-SAVVVTGEDAVVQFLLEFFVRTAH 734
           ++LHG P L  D+V N+ L      +VLVF+A  D   +V  G+   V   L   V ++H
Sbjct: 381 SILHGHPLLRGDEVGNFELGS---TVVLVFEAPADFEFLVKQGQKVRVGLPLGRVVPSSH 437


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 764 AGVTEMSAGSMSSSNKELEEKLYNSILTGDYDSAVRQSLE 645
           A + + S    +  + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 182 KYENDVLFFIYNREYNDALKLGRIVDASGD 93
           +  NDV  + ++++ N+  K+G++VDA G+
Sbjct: 339 RVNNDVEAYQWSQKENEWKKIGQVVDAVGN 368


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 577 GTPWSTATSCGSATDSTLSESTSP 506
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,161,840
Number of Sequences: 5004
Number of extensions: 63308
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)