Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c02
         (917 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    28   1.6  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    27   3.7  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   8.6  
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe...    26   8.6  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 220  KIFGACPTKVSFKFINIRCFIRDYSHSSV*LTE 122
            KIFG C   V  + +NI CF+  +   +V LTE
Sbjct: 1256 KIFGICSKVVKDQEVNIPCFLLPFLVLNVILTE 1288


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 572 STYTPSHGCEMHPISEMRSKIQLV 501
           S  TP H  E H IS +RSK+ L+
Sbjct: 817 SYQTPFHAGETHLISSLRSKVDLL 840


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 900 EEASIDRAXIHNNKXXISCKRDIKKKQHTETITL 799
           E+  I +    N    +SCK D+ KK+  ET++L
Sbjct: 628 EDTCIKKRRNLNYNENLSCKVDLDKKKMLETLSL 661


>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -1

Query: 173 HKVLHSRLFSFECLANGMFTVKF*DKS*GFFERSYMKTERVDCTQGSRSLPAI 15
           HKVL  R F FE  ++G+   K   ++ G  E+     + ++ +   R LP +
Sbjct: 75  HKVLVQRQFGFEEKSHGLKYKKLFRRNIGTSEKKNRLPDLLELSSSPRRLPIL 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,840,219
Number of Sequences: 5004
Number of extensions: 84301
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)