Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c02
         (917 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042     30   3.0  
03_05_0911 + 28697654-28697698,28698170-28698278,28698352-286984...    28   9.0  
03_02_0933 - 12505196-12505286,12505759-12505814,12508780-125088...    28   9.0  

>05_04_0033 - 17369134-17369321,17369522-17370355,17370429-17373042
          Length = 1211

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +3

Query: 51  NTFRLHV*TFKETSTLVLKFYGKHSVS*TLE*E*SRMKHLMLINLKLTFVGHAPKIL 221
           N F   V   K+   L L FY    +  ++     ++KHL  +N+K T +   PK L
Sbjct: 586 NIFEQVVLNLKKLQVLYLSFYNTRKLPESI----GQLKHLRYLNIKKTLISELPKSL 638


>03_05_0911 +
           28697654-28697698,28698170-28698278,28698352-28698433,
           28698486-28698514,28699472-28699567,28699860-28699963,
           28700071-28700201,28700276-28700369,28701666-28701721,
           28702728-28702821
          Length = 279

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 364 WDCPGR-RFFKENPYLPNFVRFLLGKYWLVCII 459
           +DCPG+   F   P L NFV  L  K + VC +
Sbjct: 117 FDCPGQIELFTHVPVLRNFVEHLKRKNFNVCAV 149


>03_02_0933 -
           12505196-12505286,12505759-12505814,12508780-12508873,
           12508949-12509079,12509187-12509290,12509585-12509680,
           12510752-12510860,12511252-12511296
          Length = 241

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 364 WDCPGR-RFFKENPYLPNFVRFLLGKYWLVCII 459
           +DCPG+   F   P L NFV  L  K + VC +
Sbjct: 80  FDCPGQIELFTHVPVLRNFVEHLKRKNFNVCAV 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,923,187
Number of Sequences: 37544
Number of extensions: 517906
Number of successful extensions: 1261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2612387020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)