Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c02
         (917 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119557-1|AAM50211.1|  330|Drosophila melanogaster GH28859p pro...    29   6.8  
AE014296-3054|AAF49233.1|  330|Drosophila melanogaster CG6877-PA...    29   6.8  
BT011146-1|AAR82814.1|  942|Drosophila melanogaster GH17715p pro...    29   8.9  
AF196306-1|AAF07207.2| 1440|Drosophila melanogaster cell death p...    29   8.9  
AF162659-1|AAD45988.1| 1440|Drosophila melanogaster Apaf-1 relat...    29   8.9  
AE013599-2400|AAF57916.1| 1440|Drosophila melanogaster CG6829-PB...    29   8.9  
AB027531-1|BAA86939.1| 1440|Drosophila melanogaster Apaf-1/CED-4...    29   8.9  

>AY119557-1|AAM50211.1|  330|Drosophila melanogaster GH28859p
           protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 862 QAXHKLQKRYKKKTTHRNDHPHLQYRSRIDINVCGLAVCLRTIWREVRGGGADSG 698
           Q    + + + KKT     HPHL   +   ++ C  A  ++ I + V  GG   G
Sbjct: 246 QMYEDVSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG 300


>AE014296-3054|AAF49233.1|  330|Drosophila melanogaster CG6877-PA
           protein.
          Length = 330

 Score = 29.5 bits (63), Expect = 6.8
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 862 QAXHKLQKRYKKKTTHRNDHPHLQYRSRIDINVCGLAVCLRTIWREVRGGGADSG 698
           Q    + + + KKT     HPHL   +   ++ C  A  ++ I + V  GG   G
Sbjct: 246 QMYEDVSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG 300


>BT011146-1|AAR82814.1|  942|Drosophila melanogaster GH17715p
           protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253 HEHCLRKLLF-PCFTLKYSIFAPNNIFW 333
           HEHC+R+LLF PC  L  S  A    FW
Sbjct: 734 HEHCIRQLLFSPCKLLLISC-AEQLCFW 760


>AF196306-1|AAF07207.2| 1440|Drosophila melanogaster cell death
            protein HAC-1 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253  HEHCLRKLLF-PCFTLKYSIFAPNNIFW 333
            HEHC+R+LLF PC  L  S  A    FW
Sbjct: 1232 HEHCIRQLLFSPCKLLLISC-AEQLCFW 1258


>AF162659-1|AAD45988.1| 1440|Drosophila melanogaster Apaf-1 related
            killer DARK protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253  HEHCLRKLLF-PCFTLKYSIFAPNNIFW 333
            HEHC+R+LLF PC  L  S  A    FW
Sbjct: 1232 HEHCIRQLLFSPCKLLLISC-AEQLCFW 1258


>AE013599-2400|AAF57916.1| 1440|Drosophila melanogaster CG6829-PB,
            isoform B protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253  HEHCLRKLLF-PCFTLKYSIFAPNNIFW 333
            HEHC+R+LLF PC  L  S  A    FW
Sbjct: 1232 HEHCIRQLLFSPCKLLLISC-AEQLCFW 1258


>AB027531-1|BAA86939.1| 1440|Drosophila melanogaster
            Apaf-1/CED-4-related caspase activatorDapaf-1L protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 8.9
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 253  HEHCLRKLLF-PCFTLKYSIFAPNNIFW 333
            HEHC+R+LLF PC  L  S  A    FW
Sbjct: 1232 HEHCIRQLLFSPCKLLLISC-AEQLCFW 1258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,220,217
Number of Sequences: 53049
Number of extensions: 920013
Number of successful extensions: 2547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2547
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4505424660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)