Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c02
         (917 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p...    29   3.5  
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.        29   3.5  
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ...    29   3.5  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U50191-7|AAK31555.2|  454|Caenorhabditis elegans Hypothetical
           protein T14B4.9 protein.
          Length = 454

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 146 RIISNEAPYVDKFKADFCGACSENFESRSSNVYSLITNIV*ESFYFHAL 292
           RI++N+  Y++KF  +     S N ES   + YS+   I+  +F+   L
Sbjct: 56  RILANDRSYIEKFIGEHRIPLSSNLESLDMSCYSIQNRIIPFNFHLRPL 104


>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 673 LWNRNGYDCCTHPYGFLPFG 614
           +W     DCC +PY  LP G
Sbjct: 875 IWKAANIDCCLNPYAVLPMG 894


>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
          Length = 1167

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 673 LWNRNGYDCCTHPYGFLPFG 614
           +W     DCC +PY  LP G
Sbjct: 896 IWKAANIDCCLNPYAVLPMG 915


>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
           protein B0334.8 protein.
          Length = 1146

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 673 LWNRNGYDCCTHPYGFLPFG 614
           +W     DCC +PY  LP G
Sbjct: 875 IWKAANIDCCLNPYAVLPMG 894


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -1

Query: 809 RSPSFTIPITNRHKCVRTGGLSE-DDLEGSEGR-RSGQRPDGTEIHDSMEPKW 657
           +SP  T P+TN H+  R+  LS+  +L G+  R RS      +     + P+W
Sbjct: 508 QSPVPTPPVTNEHESQRSSRLSDFTNLAGNSNRGRSSSNLGWSSTTRKVYPRW 560


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,231,486
Number of Sequences: 27780
Number of extensions: 471125
Number of successful extensions: 1101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2349764032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)