Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c02
(917 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 26 0.55
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 24 1.7
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 23 2.9
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 23 2.9
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 23 2.9
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 23 2.9
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 23 2.9
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 22 6.8
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 9.0
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 9.0
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 22 9.0
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.8 bits (54), Expect = 0.55
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 667 NRNGYDCCTHPYGFLPFGTT 608
N Y CCT PY + F T
Sbjct: 225 NEEYYPCCTEPYSDITFNIT 244
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 24.2 bits (50), Expect = 1.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 725 FPPNRPQTDRQSAHIYVYS 781
FPP R + RQ H VYS
Sbjct: 62 FPPFRAEDYRQEVHAQVYS 80
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N PL+ + N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIIS----NNNPLSNNYNYNN 96
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 60 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 100
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 293 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 333
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 23.4 bits (48), Expect = 2.9
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 31 REP*VQSTRSVFMYERSKKPQLLS*NFTVNIPLAKHSNENN 153
RE + +R+ ERSK+P+++S N +++ ++N NN
Sbjct: 293 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNN 333
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 22.2 bits (45), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 622 PFGTTAAALGPFDFSIAAHTHH 557
P T +++ P+ + AAH HH
Sbjct: 80 PAARTTSSMYPYVSAAAAHHHH 101
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = -2
Query: 667 NRNGYDCCTHPYGFLPFGTT 608
N Y CC PY + F T
Sbjct: 220 NEKFYTCCDEPYLDITFNIT 239
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = -2
Query: 667 NRNGYDCCTHPYGFLPFGTT 608
N Y CC PY + F T
Sbjct: 220 NEKFYTCCDEPYLDITFNIT 239
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 21.8 bits (44), Expect = 9.0
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = -2
Query: 667 NRNGYDCCTHPYGFLPFGTT 608
N Y CC PY + F T
Sbjct: 216 NEKFYTCCDEPYLDITFNIT 235
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 261,195
Number of Sequences: 438
Number of extensions: 6215
Number of successful extensions: 22
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -