Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16c01
         (884 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011038-1|AAR30198.1|  404|Drosophila melanogaster RE35653p pro...    85   2e-16
AE014134-826|AAF52187.1|  600|Drosophila melanogaster CG14043-PA...    85   2e-16
BT029111-1|ABJ17044.1|  935|Drosophila melanogaster IP14884p pro...    31   2.1  
AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-P...    30   3.7  

>BT011038-1|AAR30198.1|  404|Drosophila melanogaster RE35653p
           protein.
          Length = 404

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 41/93 (44%), Positives = 56/93 (60%)
 Frame = -2

Query: 730 FPSLDLIEMESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAE 551
           FP LDL   E+++      T +DA+ +F F ++WL  AK YY  E+ + +Y       AE
Sbjct: 146 FPGLDLTACENRISCEYCLTFDDAKLVFHFVNEWLDIAKDYYKAENEATEYSKIMQDYAE 205

Query: 550 LYEHLAFFERNIDNQYSIQKRRADVLENLNSLL 452
            YEH+AFFE N +NQ  +QKRRA  LE+L  LL
Sbjct: 206 AYEHIAFFEENPENQAKMQKRRAKYLEDLLDLL 238


>AE014134-826|AAF52187.1|  600|Drosophila melanogaster CG14043-PA
           protein.
          Length = 600

 Score = 84.6 bits (200), Expect = 2e-16
 Identities = 41/93 (44%), Positives = 56/93 (60%)
 Frame = -2

Query: 730 FPSLDLIEMESKVPLGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAE 551
           FP LDL   E+++      T +DA+ +F F ++WL  AK YY  E+ + +Y       AE
Sbjct: 342 FPGLDLTACENRISCEYCLTFDDAKLVFHFVNEWLDIAKDYYKAENEATEYSKIMQDYAE 401

Query: 550 LYEHLAFFERNIDNQYSIQKRRADVLENLNSLL 452
            YEH+AFFE N +NQ  +QKRRA  LE+L  LL
Sbjct: 402 AYEHIAFFEENPENQAKMQKRRAKYLEDLLDLL 434


>BT029111-1|ABJ17044.1|  935|Drosophila melanogaster IP14884p
           protein.
          Length = 935

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = -2

Query: 454 LKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINS---LD 284
           L++C       +D+    S   +E   + L  L     ++ IF LD  ADS INS   LD
Sbjct: 717 LESCKLQEEKSVDIASVNSDENIESAVVELTIL-----ESEIFPLDTTADSSINSTNVLD 771

Query: 283 SDSTKTITEKTL 248
           S   KTI ++ L
Sbjct: 772 SSVEKTIPDRNL 783



 Score = 30.3 bits (65), Expect = 3.7
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -2

Query: 340 QTNIFNLDNDADSIINS---LDSDSTKTITEKTLN 245
           ++ IF LD   DS INS   LDS   KTI E  LN
Sbjct: 815 ESEIFPLDTTVDSSINSTNVLDSSVEKTIPEHNLN 849


>AE014298-2744|AAF48863.1| 1895|Drosophila melanogaster CG15040-PA
            protein.
          Length = 1895

 Score = 30.3 bits (65), Expect = 3.7
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = -2

Query: 523  RNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLELMALNLQKLWRQE 344
            +N DNQY+IQ +  +  +N        +N  ++Q       S+ Q     +N+Q   +  
Sbjct: 1708 KNQDNQYNIQSKNQNNTQNSIQSKNQNNNQNTIQSRNQNMQSRNQ-NNNQINIQSKNQNN 1766

Query: 343  SQTNI--FNLDNDADSIINSLDSDSTKTITEKTLNTSCKNV 227
            +Q NI   N +N+ ++I +   +++   I  K  N +  N+
Sbjct: 1767 NQNNIQSKNQNNNQNNIQSKNQNNNQNNIQSKNQNNNQNNI 1807


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,902,276
Number of Sequences: 53049
Number of extensions: 610437
Number of successful extensions: 2073
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2073
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)