Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16c01
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical pr... 35 0.089
Z75714-8|CAB00061.1| 471|Caenorhabditis elegans Hypothetical pr... 31 1.4
AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical ... 31 1.4
U23519-4|AAK31501.1| 358|Caenorhabditis elegans Toxin-regulated... 30 1.9
AY533304-1|AAS21306.1| 359|Caenorhabditis elegans BRE-2 protein. 30 1.9
AL110487-12|CAB54430.2| 308|Caenorhabditis elegans Hypothetical... 30 1.9
Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical pr... 30 2.5
X59156-5|CAA41877.1| 87|Caenorhabditis elegans transposase pro... 29 4.4
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 29 5.8
Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical p... 28 7.7
Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical p... 28 7.7
Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical pr... 28 7.7
U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical p... 28 7.7
>Z74035-3|CAA98481.1| 808|Caenorhabditis elegans Hypothetical
protein F47G9.4 protein.
Length = 808
Score = 34.7 bits (76), Expect = 0.089
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Frame = +3
Query: 102 CFQFFSIPVPKLSCEGVLSPKCPLRRYSFSFKEVVASILRRNTFLHDVLRVFSVIVLVES 281
C F P+ LSC+ KC S + S R +T D L F L+++
Sbjct: 11 CKNEFEEPI-LLSCQHTTCRKCSTGSPSCKSCSPIPSTSRSHTPHPDKLAAF----LLDA 65
Query: 282 ESKEFMIESASLSRLN--MFVCDSCRQSFC 365
SKE M E A+ +++ MF C++C+QS C
Sbjct: 66 -SKEEMEECANCEQISLPMFYCETCQQSLC 94
>Z75714-8|CAB00061.1| 471|Caenorhabditis elegans Hypothetical
protein ZC434.7a protein.
Length = 471
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/96 (23%), Positives = 43/96 (44%)
Frame = -2
Query: 559 LAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLEL 380
++ +EH+ F R I NQ K R +V+E N CD + + + +IR + E
Sbjct: 330 ISSKFEHVFFATRRISNQ----KLRKEVMERYNGNALFCDKLSTDDLIIIRMALEFGPET 385
Query: 379 MALNLQKLWRQESQTNIFNLDNDADSIINSLDSDST 272
+ K + ++ I N D + I + +D++
Sbjct: 386 SIVTNDKY--TDHRSAICNGDQKLEKIFDDFLTDAS 419
>AC084155-5|AAK84606.1| 433|Caenorhabditis elegans Hypothetical
protein Y45G5AM.7 protein.
Length = 433
Score = 30.7 bits (66), Expect = 1.4
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Frame = -2
Query: 532 FFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRE----LSQVQLELMALNL 365
F ER +D R ++L+ NS L + + +D + E L EL +N+
Sbjct: 143 FHERELD-----LARNVEILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEINV 197
Query: 364 QKLWR-QESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSCKNVFLRKMEATTSLNE 188
+ S IF+L + L+ ++ K + E+T+ + K FL++ + +T E
Sbjct: 198 DNERKISNSSDEIFSLQDLLGKTKVQLEEETEKVLQERTIVENLKAQFLKERKESTEKIE 257
Query: 187 KLYR 176
+ +
Sbjct: 258 LIQK 261
>U23519-4|AAK31501.1| 358|Caenorhabditis elegans Toxin-regulated
target of p38mapkprotein 2 protein.
Length = 358
Score = 30.3 bits (65), Expect = 1.9
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Frame = -2
Query: 841 TVEMADDNHDTKI--QEENLKDLGAEKSKGDGTP-----EKLFSFPSLDLIEMESKVPLG 683
T+E+ N KI EENL L E K TP +K F+FP I +E +P
Sbjct: 148 TLEIQLYNQGFKIASHEENLVVLNYESIKRQVTPKPVNFQKTFNFPKERSISLEMLLPTD 207
Query: 682 LVCTAEDARKLFAFTHKWLMRAKHYY 605
+ T ++W K+ +
Sbjct: 208 VFTTTARLENCITICNRWKQSLKYVH 233
>AY533304-1|AAS21306.1| 359|Caenorhabditis elegans BRE-2 protein.
Length = 359
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -2
Query: 415 VIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSC 236
++ +L L L + L S+T NL D + T I +KT+NTS
Sbjct: 153 IVIDLEDNYLNLSYKTISLLLYSISKTKSPNLIGKIDEDVLFYPDQLTPLINDKTINTST 212
Query: 235 KNVFLRKMEATTSLN 191
+++ K EA ++N
Sbjct: 213 FSIYGEKYEAGVAVN 227
>AL110487-12|CAB54430.2| 308|Caenorhabditis elegans Hypothetical
protein Y39E4B.9 protein.
Length = 308
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/75 (26%), Positives = 33/75 (44%)
Frame = -2
Query: 415 VIRELSQVQLELMALNLQKLWRQESQTNIFNLDNDADSIINSLDSDSTKTITEKTLNTSC 236
++ +L L L + L S+T NL D + T I +KT+NTS
Sbjct: 153 IVIDLEDNYLNLSYKTISLLLYSISKTKSPNLIGKIDEDVLFYPDQLTPLINDKTINTST 212
Query: 235 KNVFLRKMEATTSLN 191
+++ K EA ++N
Sbjct: 213 FSIYGEKYEAGVAVN 227
>Z69661-2|CAA93494.1| 925|Caenorhabditis elegans Hypothetical
protein F48F7.4 protein.
Length = 925
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 572 RYVLSRMVFKVVVM-FSSHEPFVCKSKKFSSIFCCTYQ 682
R + R +F +V + S +PF+ ++ S+FCC +Q
Sbjct: 107 RGIAFRSLFVIVFLCLSLSQPFIFLQSQYISVFCCVFQ 144
>X59156-5|CAA41877.1| 87|Caenorhabditis elegans transposase
protein.
Length = 87
Score = 29.1 bits (62), Expect = 4.4
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = -2
Query: 619 AKHYYDFEHHSAQYISCSLQLAE----LYEHLAFFE 524
A+ Y ++HH +YI+CSL+L L LAF E
Sbjct: 11 AQSLYRYDHHLKRYINCSLRLPTFTGILLSKLAFVE 46
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = -2
Query: 388 LELMALNLQKLWRQESQTNIFNLDND----ADSIINSLDSDSTKTITEKTLNTSCKNVFL 221
LE+ +L+ +W S+ +I+N D S INSL S+ + + + +L+ N L
Sbjct: 107 LEIAVKDLKTVWNNVSKLHIYNYAEDRTDIITSFINSLKSEKSVHVKQISLSNFSFNDVL 166
Query: 220 RKMEATTSLNEKLYRLSGHLGLKTPSQLS 134
++ + + +LS + +Q++
Sbjct: 167 NILQCLDDQSLEAIKLSNPSQINQLAQIT 195
>Z83102-11|CAB05470.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 577 ISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSV 425
+SCS +L+E YE L F N+ SI ++R L+N + +KT ++ +
Sbjct: 96 VSCSNKLSESYEELLNFYVKEANE-SIARKRQSPLKNAHQ-VKTSKELLEI 144
>Z81492-11|CAB04035.1| 310|Caenorhabditis elegans Hypothetical
protein E03H4.13 protein.
Length = 310
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 577 ISCSLQLAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSV 425
+SCS +L+E YE L F N+ SI ++R L+N + +KT ++ +
Sbjct: 96 VSCSNKLSESYEELLNFYVKEANE-SIARKRQSPLKNAHQ-VKTSKELLEI 144
>Z29094-3|CAA82343.1| 358|Caenorhabditis elegans Hypothetical
protein C07A9.5 protein.
Length = 358
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/99 (20%), Positives = 43/99 (43%)
Frame = -2
Query: 688 LGLVCTAEDARKLFAFTHKWLMRAKHYYDFEHHSAQYISCSLQLAELYEHLAFFERNIDN 509
+G + T + F+ H ++ E + + + + ++ L + ++ R +D
Sbjct: 48 VGFLETESPSTGRFSTNHSTWTHSRPTVSGERFTHSFKTLASRMERLDQTISDRIRIVDG 107
Query: 508 QYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQV 392
+ S + E LKTCDN++ +DV +EL +
Sbjct: 108 EISRHSDNEKICEQAACTLKTCDNVI---VDVKKELEML 143
>U80437-10|AAN84839.1| 656|Caenorhabditis elegans Hypothetical
protein C43E11.11 protein.
Length = 656
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -2
Query: 559 LAELYEHLAFFERNIDNQYSIQKRRADVLENLNSLLKTCDNMMSVQIDVIRELSQVQLEL 380
L L E + + D +S+Q R V + N L CD++ + + R+L L+
Sbjct: 60 LPRLLEQVPALQSLEDTLHSVQMRMTSVTKESNRLATVCDDLTTKLREQTRQLEATMLKR 119
Query: 379 -MALNLQK 359
MA + Q+
Sbjct: 120 NMASDAQR 127
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,383,191
Number of Sequences: 27780
Number of extensions: 329159
Number of successful extensions: 1088
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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