Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b24
         (684 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127190-1|BAC86879.1|  171|Homo sapiens protein ( Homo sapiens ...    31   2.9  
AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.           30   6.7  
AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.           30   6.7  
AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.           30   6.7  
AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with...    30   6.7  

>AK127190-1|BAC86879.1|  171|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45255 fis, clone BRHIP2015153. ).
          Length = 171

 Score = 31.5 bits (68), Expect = 2.9
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = -1

Query: 231 WKYNCEPAHCT--PPQVSTETGPRLQVSRNDRLPHGNLVIISQS*RTTVSFRIGHGHRKT 58
           W Y CEP+H    PP  S    P L+  +  R    +L +I  +  T  S   G   R  
Sbjct: 103 WNYRCEPSHLATRPPLTSVGMAPGLRGQKRSRASKQDLGLIEGNLHTEQSSGGGLDRRTA 162

Query: 57  RP 52
            P
Sbjct: 163 PP 164


>AL359257-2|CAI39759.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 329 LHLSMGKVRHEMLLFADQGPAGSFSGVPNVARDGSITVNRHTVPLLKFQLKLVHGSKFLV 150
           +H S+G      LL A+ G    F+G  +   DG  T +R      K +  +    K +V
Sbjct: 545 VHFSVGHDGSHALLVAEDGSI-FFTGSASKGEDGESTKSRRQSKPYKPKKIIKMEGKIVV 603

Query: 149 MTDCHMGISSLSARADE 99
            T C+ G SS+ ++  E
Sbjct: 604 YTACNNGSSSVISKDGE 620


>AL159158-1|CAI16842.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 329 LHLSMGKVRHEMLLFADQGPAGSFSGVPNVARDGSITVNRHTVPLLKFQLKLVHGSKFLV 150
           +H S+G      LL A+ G    F+G  +   DG  T +R      K +  +    K +V
Sbjct: 545 VHFSVGHDGSHALLVAEDGSI-FFTGSASKGEDGESTKSRRQSKPYKPKKIIKMEGKIVV 603

Query: 149 MTDCHMGISSLSARADE 99
            T C+ G SS+ ++  E
Sbjct: 604 YTACNNGSSSVISKDGE 620


>AL159154-1|CAH73736.1| 4640|Homo sapiens AC001226.5 protein.
          Length = 4640

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = -2

Query: 329 LHLSMGKVRHEMLLFADQGPAGSFSGVPNVARDGSITVNRHTVPLLKFQLKLVHGSKFLV 150
           +H S+G      LL A+ G    F+G  +   DG  T +R      K +  +    K +V
Sbjct: 545 VHFSVGHDGSHALLVAEDGSI-FFTGSASKGEDGESTKSRRQSKPYKPKKIIKMEGKIVV 603

Query: 149 MTDCHMGISSLSARADE 99
            T C+ G SS+ ++  E
Sbjct: 604 YTACNNGSSSVISKDGE 620


>AF075587-1|AAC39928.1| 4641|Homo sapiens protein associated with
           Myc protein.
          Length = 4641

 Score = 30.3 bits (65), Expect = 6.7
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = -2

Query: 329 LHLSMGKVRHEMLLFADQGPAGSFSGVPNVARDG-SITVNRHTVPLLKFQLKLVHGSKFL 153
           +H S+G      LL A+ G    F+G  +   DG SI   R + P    ++  + G K +
Sbjct: 545 VHFSVGHDGSHALLVAEDGSI-FFTGSASKGEDGESIKSRRQSKPYKPKKIIKMEG-KIV 602

Query: 152 VMTDCHMGISSLSARADE 99
           V T C+ G SS+ ++  E
Sbjct: 603 VYTACNNGSSSVISKDGE 620


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,262,191
Number of Sequences: 237096
Number of extensions: 2526157
Number of successful extensions: 5415
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5415
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)