Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b22
         (837 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    30   0.35 
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   5.8  

>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -1

Query: 279 IKKNALFIKNAQQHFLKVNPLKIFLFRV*SNKHPPNGIRLPSLMATSDARSTAKPLPITK 100
           +KK AL  + +    L ++ LKIF+    +NK+  NG R+P   +T       K L + K
Sbjct: 294 LKKKALGKQLSDDEELAIDRLKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLK 353

Query: 99  DSF 91
            ++
Sbjct: 354 ATY 356


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/25 (36%), Positives = 19/25 (76%)
 Frame = -3

Query: 553 PRSLISYLCRLSLRHARATR*NVAK 479
           P+  IS+LC++ ++H+R ++ N+ K
Sbjct: 137 PKDEISFLCQVPVKHSRDSQKNMIK 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,135,066
Number of Sequences: 5004
Number of extensions: 60062
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)