Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b22
         (837 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0393 - 24632570-24632629,24633212-24633370,24633496-246336...    31   0.86 
02_02_0543 + 11360514-11361350,11361434-11361559,11361648-113619...    31   0.86 

>05_05_0393 -
           24632570-24632629,24633212-24633370,24633496-24633612,
           24633697-24633831,24634140-24634337,24634449-24634529,
           24634845-24635141,24635231-24636013,24636589-24636765
          Length = 668

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -3

Query: 76  WVDELTAHLVLSGYLEPKDIYDIN 5
           W D +TA L  SG LEPKD+  +N
Sbjct: 498 WKDPITAALAQSGLLEPKDVDPLN 521


>02_02_0543 +
           11360514-11361350,11361434-11361559,11361648-11361976,
           11362078-11362861
          Length = 691

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 672 DQPRHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGI 556
           D  RHF P  + R    V F+P+ G ++ KV  +  RG+
Sbjct: 533 DVQRHFRPELISRLTEMVVFRPLSGEQLRKVARLQLRGM 571


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,696,332
Number of Sequences: 37544
Number of extensions: 374771
Number of successful extensions: 731
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)