Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b22
         (837 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    28   9.5  

>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = -1

Query: 663 RHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGILLAHSLA-TSVDYLCVMQGLLDET 487
           R ++  + +    +  + PI G+  W+ + +    IL  HS + TS   L +++ L+   
Sbjct: 184 RIYVEKTALFLIAATFYYPIVGS-YWRYQAMK---ILKTHSSSNTSKGTLVLLRFLIKG- 238

Query: 486 *LNFKILLN*IEYFVTEFVYIFH 418
            LNF+ILL  I Y  T  +Y+F+
Sbjct: 239 -LNFQILLPMISYIPTTSIYVFN 260


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/82 (28%), Positives = 41/82 (50%)
 Frame = -1

Query: 663 RHFIPSSVMRRALSVAFKPIPGTEVWKVREVLTRGILLAHSLATSVDYLCVMQGLLDET* 484
           + ++  + M   ++  + PI G+  WK  + +T  +L  H  + +     VM   L +  
Sbjct: 184 KEYVEKTAMFLLVATFYYPIVGS-YWK-HQAMT--MLKTHLSSNTSKVTRVMFQTLIKG- 238

Query: 483 LNFKILLN*IEYFVTEFVYIFH 418
           LNF+ILL  I Y  T  +Y+F+
Sbjct: 239 LNFQILLPMISYIPTTSIYLFN 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,266,826
Number of Sequences: 27780
Number of extensions: 340076
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)