Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b21
(818 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 148 1e-36
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 121 1e-28
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 111 9e-26
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 104 1e-23
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 95 8e-21
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 90 3e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 90 4e-19
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 89 5e-19
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 84 3e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 81 1e-16
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 81 1e-16
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 79 7e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 76 5e-15
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 5e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 72 9e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 72 9e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 70 3e-13
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 70 3e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 1e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 64 3e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 63 4e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 62 9e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 57 3e-09
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 53 4e-08
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 49 9e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 46 6e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 46 6e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 44 3e-05
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 37 0.003
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.34
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 1.4
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.4
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.8
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.4
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 27 3.2
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 4.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 7.4
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 26 7.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 7.4
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 26 7.4
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 26 7.4
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces... 25 9.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 148 bits (358), Expect = 1e-36
Identities = 63/109 (57%), Positives = 89/109 (81%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
PA+ +HGDK Q ERD VL +F+ G++ I+VATDVA+RG+DV GI +V N+D+P ++EDY+
Sbjct: 395 PALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYV 454
Query: 614 HRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 468
HRIGRTGR+ +KGT+Y +FT N++QA++LVS+L EA Q I P+L+ MA
Sbjct: 455 HRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMA 503
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 121 bits (291), Expect = 1e-28
Identities = 56/109 (51%), Positives = 77/109 (70%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
PA +HGD+TQ+ER+ L F+ GR SI+VAT VA+RGLD+ + +VIN+D P +DY+
Sbjct: 456 PATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYV 515
Query: 614 HRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMA 468
HRIGRTGR+ + G + AFF +N AK+L+ +LQEANQ L +MA
Sbjct: 516 HRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMA 564
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 111 bits (268), Expect = 9e-26
Identities = 52/99 (52%), Positives = 71/99 (71%)
Frame = -1
Query: 788 VCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHR 609
V +HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VIN +P + EDY+HR
Sbjct: 444 VGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHR 503
Query: 608 IGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQII 492
IGRTGR+ +KGT+ FFTP + A +LV+VL++A Q I
Sbjct: 504 IGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDI 542
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 104 bits (250), Expect = 1e-23
Identities = 44/107 (41%), Positives = 67/107 (62%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
+HG K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D PN EDY+HR+G
Sbjct: 698 IHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVG 757
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMADR 462
RTGR+ G + F TP + A D+ L+ + Q + +LQ++A +
Sbjct: 758 RTGRAGHTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 95.5 bits (227), Expect = 8e-21
Identities = 41/93 (44%), Positives = 62/93 (66%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
+HG+ Q +R+E L +F++G +L+ATD+ ARG+D G+K VINFD+P S YIHRIG
Sbjct: 318 IHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIG 377
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 504
RTGR+ + G + FFT + K + V++ +
Sbjct: 378 RTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSS 410
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/86 (44%), Positives = 58/86 (67%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
MHG+ Q+ERD ++ F++G + +L+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 290 MHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIG 349
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDL 525
R+GR KG + F T + R +D+
Sbjct: 350 RSGRFGRKGVAINFVTNEDVRILRDI 375
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.8 bits (213), Expect = 4e-19
Identities = 40/96 (41%), Positives = 60/96 (62%)
Frame = -1
Query: 791 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 612
AV +HG K+Q++R+ + Q + A ILVATD+A RG+D+ + V+N++ S EDY H
Sbjct: 543 AVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTH 602
Query: 611 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEA 504
RIGRTGR+ GT+ F P ++ DL +L +
Sbjct: 603 RIGRTGRAGKSGTAITFLGPEDTDVYYDLRVLLSRS 638
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 89.4 bits (212), Expect = 5e-19
Identities = 39/86 (45%), Positives = 57/86 (66%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
MHGD Q +RD ++++F+ G + IL+ TD+ ARG+DV + VIN+D P + E+YIHRIG
Sbjct: 288 MHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIG 347
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDL 525
R GR KG S F T + R +++
Sbjct: 348 RGGRFGRKGVSINFVTNDDVRMMREI 373
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 83.8 bits (198), Expect = 3e-17
Identities = 38/98 (38%), Positives = 57/98 (58%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
P++C+HG Q+ER + FK+ I VATDV RG+D++ + VIN+D P+S + Y+
Sbjct: 321 PSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYL 380
Query: 614 HRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEAN 501
HR+GR GR +KG + F + Q D + E N
Sbjct: 381 HRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVN 418
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 81.4 bits (192), Expect = 1e-16
Identities = 40/79 (50%), Positives = 50/79 (63%)
Frame = -1
Query: 791 AVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 612
A+ +HG +Q R L +FK G S LVATDVAARGLD+ + VIN+D P S+ YIH
Sbjct: 312 AIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
Query: 611 RIGRTGRSKSKGTSYAFFT 555
R+GRT R+ G S A T
Sbjct: 372 RVGRTARAGRAGKSIALVT 390
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 81.4 bits (192), Expect = 1e-16
Identities = 37/76 (48%), Positives = 50/76 (65%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
+H + Q+ER L +F+ A ILVATDVA+RGLD+ ++ VINFD P +DYIHR+G
Sbjct: 288 LHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVG 347
Query: 602 RTGRSKSKGTSYAFFT 555
RT R+ G S + T
Sbjct: 348 RTARAGRSGESISIVT 363
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 79.0 bits (186), Expect = 7e-16
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
P + +HG + QQ R ++F IL+ T+VAARGLD+ + +++ +D P+ DYI
Sbjct: 362 PVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYI 421
Query: 614 HRIGRTGR-SKSKGTSYAFFTPS 549
HR+GRT R +K G S F PS
Sbjct: 422 HRVGRTARGTKGTGKSLMFLAPS 444
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 76.2 bits (179), Expect = 5e-15
Identities = 31/69 (44%), Positives = 50/69 (72%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
+HG +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P + E Y+HR+G
Sbjct: 534 IHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVG 593
Query: 602 RTGRSKSKG 576
RT R+ G
Sbjct: 594 RTARAGRSG 602
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.9 bits (171), Expect = 5e-14
Identities = 41/102 (40%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRAS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 612
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
Query: 611 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 486
RIGRT R+ G + F P S L S + AN + P
Sbjct: 533 RIGRTARAGHNGAAIMFLLPKESEYINLLKSSV-SANILEQP 573
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.1 bits (169), Expect = 9e-14
Identities = 29/75 (38%), Positives = 46/75 (61%)
Frame = -1
Query: 779 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 600
H Q R+ V + F+ G LV +D+ RG+D+ + VINFD+P ++E Y+HRIGR
Sbjct: 312 HAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGR 371
Query: 599 TGRSKSKGTSYAFFT 555
+GR +G + +F +
Sbjct: 372 SGRFGHRGLAISFIS 386
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.1 bits (169), Expect = 9e-14
Identities = 33/90 (36%), Positives = 52/90 (57%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
P+ +H Q++R + L +FK +LV TDVAARG+D+ + +VI++ P++++ Y+
Sbjct: 415 PSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYV 474
Query: 614 HRIGRTGRSKSKGTSYAFFTPSNSRQAKDL 525
HR GRT R+ G S P Q K L
Sbjct: 475 HRSGRTARANEDGVSILMCGPKELSQLKRL 504
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/76 (40%), Positives = 46/76 (60%)
Frame = -1
Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
P +H T +R + F++ ++ IL ATDV ARG+D I V+ P++++DYI
Sbjct: 319 PCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYI 378
Query: 614 HRIGRTGRSKSKGTSY 567
HRIGRTGR+ G +Y
Sbjct: 379 HRIGRTGRAGKTGEAY 394
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 70.1 bits (164), Expect = 3e-13
Identities = 34/88 (38%), Positives = 44/88 (50%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
+HG + Q R EV +F R +L TD+ ARGLD + +VI D P + YIHR+G
Sbjct: 315 LHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVG 374
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDLVS 519
RT R G + PS K L S
Sbjct: 375 RTARYNRSGNALLLLLPSEEAFLKRLES 402
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 68.5 bits (160), Expect = 1e-12
Identities = 33/106 (31%), Positives = 60/106 (56%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
++G Q+ R + F+ G+ ++LV TDVA+RG+D+ + VIN+D+P + ++HR+G
Sbjct: 376 IYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVG 435
Query: 602 RTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISPQLQSMAD 465
RT R+ G +Y+ ++ DL L S Q+++ +D
Sbjct: 436 RTARAGRTGWAYSLVRAEDAGYLLDLQLFLNRPLVTSSKQVKTDSD 481
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = -1
Query: 767 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 588
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y+HRIGRT R+
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARA 531
Query: 587 KSKGTSYAFFTPSNSRQAKDLVSVLQ 510
+G ++ LV L+
Sbjct: 532 GREGFAWTLVQSHEGHHFSKLVKQLR 557
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 63.3 bits (147), Expect = 4e-11
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Frame = -1
Query: 785 CMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYP------NSSE 624
C+ G+ +RD ++ F+ G + +LV T+V ARG+DV + V+N+D P +
Sbjct: 381 CLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQ 440
Query: 623 DYIHRIGRTGRSKSKGTSYAF 561
Y+HRIGRTGR G S F
Sbjct: 441 TYLHRIGRTGRFGRVGVSINF 461
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 62.1 bits (144), Expect = 9e-11
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -1
Query: 788 VCMHGDKTQQERDEVLYQFKEG-RASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIH 612
V +HG + Q R +FK+ + ++L TD+A+RGLD+ + +V+ D P + + H
Sbjct: 286 VALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
Query: 611 RIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSV 516
R GR GR+ G + + ++L+ V
Sbjct: 346 RCGRAGRAGRAGVAIVLLNDGREEEYEELLRV 377
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 57.2 bits (132), Expect = 3e-09
Identities = 23/48 (47%), Positives = 34/48 (70%)
Frame = -1
Query: 689 ARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTPSN 546
ARGLD + + V+NFD P++++ YIHRIGRT R+ GT+ +F P +
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFVVPKS 434
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 53.2 bits (122), Expect = 4e-08
Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Frame = -1
Query: 767 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRS 588
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D S + R+GRTGR
Sbjct: 477 SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTGR- 535
Query: 587 KSKGTSYAFFTPSNS----RQAKDLVSVLQEANQIISPQLQSMADR 462
K KG Y T +AKD LQ+ I+S + S++++
Sbjct: 536 KRKGYIYMLLTRGKEEAKWERAKDAYRTLQD--NIVSGRGLSLSEK 579
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 48.8 bits (111), Expect = 9e-07
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = -1
Query: 764 QQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSK 585
Q ++ E + QF+ G + LVAT + GLD+ +I +D +S I R+GRTGR K
Sbjct: 517 QMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKK 576
Query: 584 S 582
S
Sbjct: 577 S 577
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 776 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 602 RTGRSKSKGTSYAFFTPSNS 543
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = -1
Query: 776 GDKTQQERDEVLYQFKE--GRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIG 603
GD + +ER F+ G+ I++AT G++ G++ V+++ P SS DY+ G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 602 RTGRSKSKGTSYAFFTPSNS 543
R GR + F+ +S
Sbjct: 1511 RAGRDGKYAIAALFYEKYDS 1530
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 45.2 bits (102), Expect = 1e-05
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = -1
Query: 779 HGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGR 600
H + ER + +++ G I+VAT G+D +++VI+ +P S E Y GR
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGR 833
Query: 599 TGRSKSKGTSYAFFT 555
GR F++
Sbjct: 834 AGRDGKPAHCIMFYS 848
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 44.0 bits (99), Expect = 3e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = -1
Query: 797 GPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDY 618
GP+ T + + + L++FK G+ ++L+AT VA G+DV VI F+ + Y
Sbjct: 398 GPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQY 457
Query: 617 IHRIGRTGRSKSK 579
+ GR SK
Sbjct: 458 VQSRGRARAMASK 470
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = -1
Query: 809 GDMAGPAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNS 630
GD+ T QER ++ + G+ ++AT+ G+D+ + VI +P S
Sbjct: 581 GDLLSKIQSYRAGYTVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYS 640
Query: 629 SEDYIHRIGRTGR 591
+ + GR GR
Sbjct: 641 LSNLRQQFGRAGR 653
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -1
Query: 638 PNSSEDYIHRIGRTGRSKSKGTSYAFFTPSNSRQAKDLVSVLQEANQIISP 486
P SS+ + I K + F PSNS KDL +V ++ N++ SP
Sbjct: 246 PLSSQQILPAISNNTSEKPDSNNCGFLLPSNSTSIKDLKNV-KKGNRLNSP 295
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 725 GRASILVATDVAARGLDVDGIKYVINFDY 639
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 725 GRASILVATDVAARGLDVDGIKYVIN 648
G +++AT++A L +DGI YV++
Sbjct: 777 GGRKVVIATNIAETSLTIDGIYYVVD 802
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -1
Query: 767 TQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 648
T +++ +V EG +VAT+VA + + I+YV++
Sbjct: 712 TTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 258 HNIYLYYEDSPS*KCQQKSYLIVVKSFVTTAPPLATLA 371
H+IY+ S C + YL ++ + V TA PL+ +A
Sbjct: 330 HDIYIAGISSVHNVCPKGYYLAIISTIVETANPLSEIA 367
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -2
Query: 583 QKEHHMLSLPLQIPVKPKIWYLFYKKLIRLLAHNCSRWP 467
+KE ++S+P + +KPK Y+KL++++ + +P
Sbjct: 379 EKEKELISVPSKSDIKPK----HYRKLLKIIEKRINMYP 413
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -1
Query: 782 MHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVIN 648
+H T E+ V + ++ +T++A + +DGI YV++
Sbjct: 275 LHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 7.4
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = -1
Query: 713 ILVATDVAARGLDVDGIKYVIN 648
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -1
Query: 713 ILVATDVAARGLDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTSYAFFTP 552
+ VA RGL + I ++ + S Y H GR G G + F P
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFIIP 527
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 671 DGIKYVINFDYPNSS--EDYIHRIGRTGRSKSKGTSYAFFTPSNSRQ 537
DG K+V++ DYP+ + ++ H + + SK ++ + SN ++
Sbjct: 97 DGAKFVVSTDYPDPALIDNLEHNVKQYAEIASKISAVGYLWGSNIKE 143
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 7.4
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 677 DVDGIKYVINFDYPNSSEDYIHRIGRTGRSKS---KGTSYAFFTPSNSRQAKDLVSVLQE 507
++D I+ + F+ N +D I G+ K KG + A PSN+ ++ + +
Sbjct: 203 ELDDIETIKLFEELNEMKDEIDAHIEGGKCKEVLRKGINVAILGPSNAGKSSLINLLANR 262
Query: 506 ANQIISPQLQSMAD 465
I+SPQ + D
Sbjct: 263 RISIVSPQSGTTRD 276
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -3
Query: 621 LHPSY-WENWTFKIKRNIICFLYPFKFP 541
LHP Y + WT ++ RN I YP+ P
Sbjct: 109 LHPDYEYILWTDEMSRNFIADNYPWFLP 136
>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 350
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 680 LDVDGIKYVINFDYPNSSEDYIHRIGRTGRSKSKGTS 570
L +D + I YP S EDY + R SK S
Sbjct: 146 LIIDNLSMPIQLAYPTSPEDYAYLRLRRNTSKKSSLS 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,570
Number of Sequences: 5004
Number of extensions: 63240
Number of successful extensions: 213
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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