Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b21
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      111   6e-27
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.64 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.64 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  111 bits (268), Expect = 6e-27
 Identities = 50/102 (49%), Positives = 71/102 (69%), Gaps = 1/102 (0%)
 Frame = -1

Query: 794 PAVCMHGDKTQQERDEVLYQFKEGRASILVATDVAARGLDVDGIKYVINFDYPNSSEDYI 615
           P   +HGD+ Q++R+E L  FK GR SILVAT VAARGLD+  + +VIN+D P   ++Y+
Sbjct: 477 PTTSIHGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYV 536

Query: 614 HRIGRTGRSKSKGTSYAFFTPSNSRQAK-DLVSVLQEANQII 492
           HRIGRTGR  ++G + +FF P      + DLV +L++ANQ +
Sbjct: 537 HRIGRTGRVGNRGRATSFFDPEEDAPLRGDLVRILKQANQSV 578


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 584 ILNVQFSQYDGCNPPTNLDNQNLLHI 661
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 584 ILNVQFSQYDGCNPPTNLDNQNLLHI 661
           + NV+ + + G  PP  L+N  ++H+
Sbjct: 224 VANVRIADHRGVMPPVILENSGVVHV 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,698
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)