Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b20
(837 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 279 1e-75
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 279 3e-75
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 277 6e-75
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 274 4e-74
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 271 5e-73
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 166 2e-41
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 164 7e-41
08_01_0055 - 375343-375567,375672-377540 31 1.1
08_01_0054 - 367770-370166 30 2.6
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 8.0
06_03_1221 - 28514952-28518152 28 8.0
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 8.0
03_03_0278 - 16126803-16129049 28 8.0
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 279 bits (685), Expect = 1e-75
Identities = 134/190 (70%), Positives = 154/190 (81%)
Frame = -2
Query: 785 PSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRG 606
P ++SNASCTTNCLAPLAKVI+D F IVEGLM VDGPS K WR GR
Sbjct: 192 PDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRA 251
Query: 605 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQK 426
A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVRL KPASY+ IK
Sbjct: 252 ASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAA 311
Query: 425 VKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYS 246
+KE +EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNFVKL+SWYDNE+GYS
Sbjct: 312 IKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNFVKLVSWYDNEWGYS 371
Query: 245 SRVIDLIKYI 216
SRV+DLI+++
Sbjct: 372 SRVVDLIRHM 381
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 279 bits (683), Expect = 3e-75
Identities = 131/191 (68%), Positives = 155/191 (81%)
Frame = -2
Query: 788 TPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGR 609
T ++SNASCTTNCLAPLAKVIHDNF I+EGLM VDGPS K WR GR
Sbjct: 166 TSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGR 225
Query: 608 GAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQ 429
A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP +VSVVDLTVR+ K ASY+AIK
Sbjct: 226 AASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKS 285
Query: 428 KVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGY 249
+K A+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNFVKL++WYDNE+GY
Sbjct: 286 AIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGY 345
Query: 248 SSRVIDLIKYI 216
S+RVIDLI+++
Sbjct: 346 SNRVIDLIRHM 356
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 277 bits (680), Expect = 6e-75
Identities = 132/190 (69%), Positives = 154/190 (81%)
Frame = -2
Query: 785 PSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRG 606
PS V+SNASCTTNCLAPLAK++H+ F I EGLM VDGPS K WR GRG
Sbjct: 219 PSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQKTVDGPSMKDWRGGRG 278
Query: 605 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQK 426
A QNIIP+STGAAKAVGKV+PALNGKLTGMAFRVP NVSVVDLT RL K ASYE +K
Sbjct: 279 ASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTCRLEKSASYEDVKAA 338
Query: 425 VKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYS 246
+KEA+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS
Sbjct: 339 IKEASEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSFMKLVSWYDNEWGYS 398
Query: 245 SRVIDLIKYI 216
+RV+DLI ++
Sbjct: 399 NRVLDLIGHM 408
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 274 bits (673), Expect = 4e-74
Identities = 134/188 (71%), Positives = 153/188 (81%)
Frame = -2
Query: 773 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 594
++SNASCTTNCLAPLAKVI+D F IVEGLM VDGPS K WR GR A N
Sbjct: 167 IVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSMKDWRGGRAASFN 226
Query: 593 IIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKVKEA 414
IIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTVRL KPASY+ IK +KE
Sbjct: 227 IIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDQIKAAIKEE 286
Query: 413 AEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRVI 234
AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+D FVKL+SWYDNE+GYS+RVI
Sbjct: 287 AEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTFVKLVSWYDNEWGYSTRVI 346
Query: 233 DLIKYIQS 210
DLI+++ S
Sbjct: 347 DLIRHMHS 354
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 271 bits (664), Expect = 5e-73
Identities = 128/190 (67%), Positives = 152/190 (80%)
Frame = -2
Query: 785 PSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRG 606
P V+SNASCTTNCLAPLAKV+H+ F IVEGLM VDGPS K WR GRG
Sbjct: 278 PKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKTVDGPSMKDWRGGRG 337
Query: 605 AQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQK 426
A QNIIP+STGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT R+ K ASY+ +K
Sbjct: 338 AAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTCRIEKSASYDDVKAA 397
Query: 425 VKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYS 246
+K A+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F+KL+SWYDNE+GYS
Sbjct: 398 IKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSFMKLVSWYDNEWGYS 457
Query: 245 SRVIDLIKYI 216
+RV+DLI ++
Sbjct: 458 NRVLDLIAHM 467
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 166 bits (403), Expect = 2e-41
Identities = 86/194 (44%), Positives = 115/194 (59%)
Frame = -2
Query: 788 TPSFKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGR 609
+P +ISNASCTTNCLAP K++ F I++G M +D L R R
Sbjct: 208 SPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQRLLDASHRDL-RRAR 266
Query: 608 GAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQ 429
A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL V++ K E + Q
Sbjct: 267 AAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTLAEEVNQ 326
Query: 428 KVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGY 249
+++A LKGIL + +VS DF S DA+ + + D+ VK+I+WYDNE+GY
Sbjct: 327 AFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVIAWYDNEWGY 386
Query: 248 SSRVIDLIKYIQSK 207
S RV+DL + ++
Sbjct: 387 SQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 164 bits (399), Expect = 7e-41
Identities = 87/190 (45%), Positives = 114/190 (60%), Gaps = 1/190 (0%)
Frame = -2
Query: 773 VISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXVDGPSGKLWRDGRGAQQN 594
+ISNASCTTNCLAP K++ + F IV+G M +D L R R A N
Sbjct: 225 IISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDL-RRARAAALN 283
Query: 593 IIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPA-SYEAIKQKVKE 417
I+P STGAAKAV V+P L GKL G+A RVP NVSVVDL + K + + + ++
Sbjct: 284 IVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITADDVNAAFRK 343
Query: 416 AAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFVKLISWYDNEYGYSSRV 237
AA GPL GIL + +VS DF SS DA+ + + D+ VK+++WYDNE+GYS RV
Sbjct: 344 AAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVVAWYDNEWGYSQRV 403
Query: 236 IDLIKYIQSK 207
+DL + SK
Sbjct: 404 VDLAHLVASK 413
>08_01_0055 - 375343-375567,375672-377540
Length = 697
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 702 FKVIMNNLCKWGKTVCGARSI*DDLKRGGHKPSRLT 809
+ +M+ LCK GK+ AR I D L + GHKP T
Sbjct: 315 YTALMDYLCKNGKST-EARKIFDSLVKRGHKPDSTT 349
>08_01_0054 - 367770-370166
Length = 798
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 702 FKVIMNNLCKWGKTVCGARSI*DDLKRGGHKPSRLT 809
+ +M LCK G+++ AR I D + + GHKP+ T
Sbjct: 311 YNTLMGYLCKNGRSM-EARKIFDSMVKRGHKPNSAT 345
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 256 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 354
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.3 bits (60), Expect = 8.0
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -2
Query: 644 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 471
DG +LW GRG I P A+ A + +L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
Query: 470 VRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAG-ISLN 297
S E V AA +G L V S+ G S+I++ +SLN
Sbjct: 130 Y---NRLSGELPNAPVAAAAATNARGSLSLQVLDVSSNLLAGRFPSAIWEHTPRLVSLN 185
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 8.0
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -2
Query: 602 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 423
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 422 KEAAEGPL-KGI 390
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.3 bits (60), Expect = 8.0
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 771 HLKCFLHHKLSCPTCK 724
+LK +L+H L CPTC+
Sbjct: 220 YLKVYLNHNLLCPTCR 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,928,229
Number of Sequences: 37544
Number of extensions: 390711
Number of successful extensions: 1012
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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