Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b18
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...   184   1e-47
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.85 
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   2.0  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   3.4  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   4.5  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   6.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   7.9  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score =  184 bits (448), Expect = 1e-47
 Identities = 87/165 (52%), Positives = 120/165 (72%)
 Frame = -3

Query: 677 DPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGA 498
           D FD E QR I E+IRQ  +  NM++A+E +PE FG V ML++N  +NG  VKAF+DSGA
Sbjct: 71  DLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLFVNVEINGHKVKAFVDSGA 130

Query: 497 QTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEE 318
           Q TI+SA CAE+C + RL+DTR+ G+AKGVG+ +I+G +H   ++I   +L   F+V+E 
Sbjct: 131 QATILSADCAEKCGLTRLLDTRFQGVAKGVGMAKILGCVHSAPLKIGDLYLPCRFTVIEG 190

Query: 317 QPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPE 183
           + +DMLLGLDML+R+Q  IDL+  VLRI   G E PFL ES++P+
Sbjct: 191 RDVDMLLGLDMLRRYQACIDLENNVLRI--HGKEIPFLGESEIPK 233


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 79  PCLDLSRASRICLSSWSLTDWFTMSSS-ETPDRRAHSGR 192
           P +DLS A R C  SW+  D F ++S+     R  HS R
Sbjct: 539 PTVDLSPAQRGCQDSWNYLDHFDIASAHRNVYRNIHSIR 577


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = +1

Query: 427 AHLVSTKRIMLHLSAHAADIIVVWAPESMNAFTGNPLT*QLIYNITTVPKVSGLYSIAAS 606
           A L+S     LH   H    IVV    S++   G+ +    IYNITTV  +S    +AA 
Sbjct: 425 APLISLSSKQLHPRHHNTASIVVQVGVSLSNTFGS-ICGGAIYNITTVGFISLCLGLAAV 483

Query: 607 MLASIFF 627
           +   + F
Sbjct: 484 VYMQLIF 490


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 33/125 (26%), Positives = 51/125 (40%)
 Frame = +1

Query: 94  SRASRICLSSWSLTDWFTMSSSETPDRRAHSGRSDSGRNGVSVPVVPIRRTPRLRSMLH* 273
           S +S    SS S +   + SSS +    + S  S S  +  SVP+     +    S    
Sbjct: 166 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSS---- 221

Query: 274 CRLSISRPSSISMGCSSSTENEVVKKSCSILICTM*MRPMILCTPTPLAIPAHLVSTKRI 453
              S S  SS S    SS+ + +   S S  I T+ + P    + T   +P+   ST  +
Sbjct: 222 ---SSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPS---STAAL 275

Query: 454 MLHLS 468
            L+ S
Sbjct: 276 ALNAS 280


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +3

Query: 558 HYNCSKSLWIIFHCSLHVGFYIFLPNFFSNHPLCFCVEWVRVHHPYSL 701
           HY     +W +   S HVG+        + H +  C ++  +H P SL
Sbjct: 168 HYAVLAQIWNLAD-SAHVGYLEMYQYVIARHLVAICKQYNLIHLPRSL 214


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 626 KNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQ 495
           K I++     +EY P+TF T   LY N + N F +     S AQ
Sbjct: 92  KGIQSKWYGYIEYLPKTFNT--PLYFNENDNAFLISTNAYSAAQ 133


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 836 C*PQINWHYLKQNNPR 789
           C P I WHYLK N  R
Sbjct: 391 CTPFIYWHYLKVNKKR 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,564,240
Number of Sequences: 5004
Number of extensions: 76684
Number of successful extensions: 209
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)