Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b18
(862 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006019-1|AAO74702.1| 458|Drosophila melanogaster GM04721p pro... 331 8e-91
AY075184-1|AAL68054.1| 458|Drosophila melanogaster AT13091p pro... 331 8e-91
AE014298-2408|AAF48614.1| 458|Drosophila melanogaster CG4420-PA... 331 8e-91
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 34 0.29
AE014134-3185|AAF53863.1| 470|Drosophila melanogaster CG13966-P... 31 2.7
U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse transc... 30 3.6
AY058604-1|AAL13833.1| 585|Drosophila melanogaster LD29806p pro... 29 8.2
AE014134-2996|AAF53723.2| 585|Drosophila melanogaster CG10428-P... 29 8.2
>BT006019-1|AAO74702.1| 458|Drosophila melanogaster GM04721p
protein.
Length = 458
Score = 331 bits (813), Expect = 8e-91
Identities = 155/237 (65%), Positives = 191/237 (80%)
Frame = -3
Query: 809 LKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIR 630
L+Q NP LA+A+ +G + FA +LRE I R R + R+RM+N+DPFD E QR+IAEEI+
Sbjct: 157 LRQYNPSLAEAIDSGDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIK 216
Query: 629 QKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIM 450
QKNI+ NM AA+EYNPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS CAERC++
Sbjct: 217 QKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVN 276
Query: 449 RLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQ 270
RL+DTRW G+AKGVG Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQ
Sbjct: 277 RLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQ 336
Query: 269 CNIDLKRGVLRIGTTGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 99
C IDL+R +L IGTTGT TPFLPES+LP ARL+G SED + +++ + E+ RE+
Sbjct: 337 CLIDLQRNLLIIGTTGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393
>AY075184-1|AAL68054.1| 458|Drosophila melanogaster AT13091p
protein.
Length = 458
Score = 331 bits (813), Expect = 8e-91
Identities = 155/237 (65%), Positives = 191/237 (80%)
Frame = -3
Query: 809 LKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIR 630
L+Q NP LA+A+ +G + FA +LRE I R R + R+RM+N+DPFD E QR+IAEEI+
Sbjct: 157 LRQYNPSLAEAIDSGDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIK 216
Query: 629 QKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIM 450
QKNI+ NM AA+EYNPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS CAERC++
Sbjct: 217 QKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVN 276
Query: 449 RLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQ 270
RL+DTRW G+AKGVG Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQ
Sbjct: 277 RLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQ 336
Query: 269 CNIDLKRGVLRIGTTGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 99
C IDL+R +L IGTTGT TPFLPES+LP ARL+G SED + +++ + E+ RE+
Sbjct: 337 CLIDLQRNLLIIGTTGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393
>AE014298-2408|AAF48614.1| 458|Drosophila melanogaster CG4420-PA
protein.
Length = 458
Score = 331 bits (813), Expect = 8e-91
Identities = 155/237 (65%), Positives = 191/237 (80%)
Frame = -3
Query: 809 LKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIR 630
L+Q NP LA+A+ +G + FA +LRE I R R + R+RM+N+DPFD E QR+IAEEI+
Sbjct: 157 LRQYNPSLAEAIDSGDKEKFARLLREHITERKRRNEHRMRMLNADPFDEETQRLIAEEIK 216
Query: 629 QKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIM 450
QKNI+ NM AA+EYNPE FGTV MLYINC VNG PVKAF+DSGAQTTIMS CAERC++
Sbjct: 217 QKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNGIPVKAFVDSGAQTTIMSKDCAERCHVN 276
Query: 449 RLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQ 270
RL+DTRW G+AKGVG Q I+GRIHMVQ++IE D LT+SF+VL +QPMDMLLGLDMLKRHQ
Sbjct: 277 RLIDTRWNGVAKGVGTQPILGRIHMVQLQIENDHLTSSFTVLGQQPMDMLLGLDMLKRHQ 336
Query: 269 CNIDLKRGVLRIGTTGTETPFLPESDLPECARLSGVSEDDIVNQSVKDHEERQIREA 99
C IDL+R +L IGTTGT TPFLPES+LP ARL+G SED + +++ + E+ RE+
Sbjct: 337 CLIDLQRNLLIIGTTGTTTPFLPESELPVSARLTGNSEDSMEQEAISNAIEQSKRES 393
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 33.9 bits (74), Expect = 0.29
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
Frame = -3
Query: 719 RTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCH 540
++E+ QQ+ S+P + +A R E + YN F T +I+
Sbjct: 2 QSEQLQQKQCQCTSNPRTGQ----LATAFRYSVEEDRRVYTINYNLNIFST----FIHAK 53
Query: 539 VNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIH-MVQMR 363
G + +D+GA +I+ + NI T I +G+G Q+I R ++++
Sbjct: 54 T-GVKLVFLLDTGADISILKENSDKFSNIQI---TNKINI-QGIGQQKIQSRGQTFIEIQ 108
Query: 362 IEQDFLTTSFSVLEEQ---PMDMLLGLDMLKRHQCNIDLKR 249
+ + F ++++ P D ++G+D +K++ C IDL +
Sbjct: 109 TGKYVIPHDFHLVDKNFPIPCDGIIGIDFIKKYNCQIDLNQ 149
>AE014134-3185|AAF53863.1| 470|Drosophila melanogaster CG13966-PA
protein.
Length = 470
Score = 30.7 bits (66), Expect = 2.7
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 698 RIRMMNSDPFDTEAQRMIAEEIRQK 624
R+ MMN DP D R I EE+R K
Sbjct: 95 RLNMMNQDPKDLHTARAIIEELRSK 119
>U89994-2|AAB50148.1| 1041|Drosophila melanogaster reverse
transcriptase polyprotein protein.
Length = 1041
Score = 30.3 bits (65), Expect = 3.6
Identities = 30/117 (25%), Positives = 45/117 (38%)
Frame = -3
Query: 554 YINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHM 375
YI + G +K ID+GA + E NIM + + G + I +
Sbjct: 20 YIEREIAGRTIKLLIDTGASKNYIQPL-PELKNIMPVQNKFTVKSLHGCNTVKQKCFIKL 78
Query: 374 VQMRIEQDFLTTSFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFL 204
+ Q F+ S S D ++GLD+LK+ +D K L I FL
Sbjct: 79 FNTSV-QFFILPSLS-----SFDAIIGLDLLKQGNATLDFKNKTLNINNEVESIQFL 129
>AY058604-1|AAL13833.1| 585|Drosophila melanogaster LD29806p
protein.
Length = 585
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 338 SFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPECAR 174
+FS+L+ Q LGL +QCNID G +IG + + L +C R
Sbjct: 420 AFSLLQAQKRSNELGLTNCVFYQCNIDYFVGGFKIGASLHACGTATDIVLQQCRR 474
>AE014134-2996|AAF53723.2| 585|Drosophila melanogaster CG10428-PA
protein.
Length = 585
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 338 SFSVLEEQPMDMLLGLDMLKRHQCNIDLKRGVLRIGTTGTETPFLPESDLPECAR 174
+FS+L+ Q LGL +QCNID G +IG + + L +C R
Sbjct: 420 AFSLLQAQKRSNELGLTNCVFYQCNIDYFVGGFKIGASLHACGTATDIVLQQCRR 474
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,348,494
Number of Sequences: 53049
Number of extensions: 897487
Number of successful extensions: 2857
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2856
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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