Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b16
(808 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1721 - 39426957-39428005,39428812-39428839 284 5e-77
05_04_0255 + 19462668-19462695,19463443-19464491 277 6e-75
06_03_0718 + 23840198-23840409,23841368-23841518,23842190-238422... 260 9e-70
08_01_0142 - 1121762-1122822,1123087-1123114 257 9e-69
11_01_0448 - 3469398-3469676,3470015-3470284,3470386-3470476,347... 209 2e-54
12_01_0448 + 3537661-3538018,3538920-3539047,3539740-3539763,354... 95 4e-20
04_03_0368 + 15004949-15005659,15005789-15005848 37 0.022
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569... 34 0.12
06_01_0022 - 218860-219053,219707-220010 32 0.47
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 32 0.62
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 32 0.62
02_02_0628 + 12365109-12365150,12366315-12366411,12366489-123665... 31 0.82
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 31 1.4
07_01_1073 + 9566727-9566963,9566992-9567180 31 1.4
02_02_0415 - 9981345-9981440,9981716-9981784,9982035-9982155,998... 30 1.9
05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149 30 2.5
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009... 30 2.5
11_07_0003 - 27182551-27183054 29 3.3
09_02_0278 + 6691685-6692188 29 3.3
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 29 3.3
06_01_0093 - 776567-777335,777449-777747 29 3.3
01_07_0274 + 42428947-42429108,42429405-42430178 29 3.3
08_02_0574 - 18867623-18868033,18869751-18870209 29 4.4
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 29 5.8
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 5.8
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 29 5.8
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435... 29 5.8
01_06_0352 + 28638453-28639391,28639486-28640034,28640388-286411... 29 5.8
07_03_1003 + 23239829-23240121,23240257-23240349,23240785-232409... 28 7.6
07_01_1093 + 10033403-10033984 28 7.6
06_03_0139 + 17130980-17131594,17131740-17132009 28 7.6
04_04_0920 + 29429114-29430934 28 7.6
02_04_0466 - 23149906-23150046,23150129-23150279,23151684-231517... 28 7.6
>01_06_1721 - 39426957-39428005,39428812-39428839
Length = 358
Score = 284 bits (697), Expect = 5e-77
Identities = 137/222 (61%), Positives = 164/222 (73%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
DDL +RCA+Y + G FAKWR VLKIG N PS +I NA LARYA ICQ +VPIVE
Sbjct: 124 DDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLSIDLNAQGLARYAIICQENGLVPIVE 183
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPND 353
PE+L DG HD++R VTE VLAA YKALN+HHV LEG+LLKPNMVT G KK +P
Sbjct: 184 PEILVDGSHDIERCAYVTEKVLAACYKALNEHHVLLEGSLLKPNMVTPGSESKKV-SPQL 242
Query: 352 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 173
+A TV AL RTVPAAVP + FLSGGQSEEEA+V+LNA+N + K+PW L+FS+GRALQ
Sbjct: 243 IAEYTVRALQRTVPAAVPAIVFLSGGQSEEEATVNLNAMNKLSTKKPWALSFSFGRALQQ 302
Query: 172 SVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVAGSVTG 47
S L+AWGGKTEN++ Q+ I R KAN +A+LG Y +V G
Sbjct: 303 STLKAWGGKTENVVKAQKAFITRCKANSEATLGTYQGDAVLG 344
Score = 34.7 bits (76), Expect = 0.088
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQG 717
PGIKVDKG V + G+ E TTQG
Sbjct: 100 PGIKVDKGTVEVAGTNKETTTQG 122
>05_04_0255 + 19462668-19462695,19463443-19464491
Length = 358
Score = 277 bits (680), Expect = 6e-75
Identities = 135/222 (60%), Positives = 160/222 (72%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
DDL +RCA+Y + G FAKWR VLKIG N PS AI NA LARYA ICQ +VPIVE
Sbjct: 124 DDLGKRCAKYYEAGARFAKWRAVLKIGPNEPSQLAIDLNAQGLARYAIICQENGLVPIVE 183
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPND 353
PE+L DG HD+DR V+EVVLAA YKALN+HHV LEGTLLKPNMVT G KK +P
Sbjct: 184 PEILVDGPHDIDRCAYVSEVVLAACYKALNEHHVLLEGTLLKPNMVTPGSDAKKV-SPEV 242
Query: 352 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 173
+A TV L RTVPAAVP + FLSGGQSEEEA+++LNA+N + K+PW L+FS+GRALQ
Sbjct: 243 IAEYTVRTLQRTVPAAVPAIVFLSGGQSEEEATLNLNAMNKLSTKKPWSLSFSFGRALQQ 302
Query: 172 SVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVAGSVTG 47
S L+AW GK ENI + + R KAN +A+LG Y +V G
Sbjct: 303 STLKAWSGKAENIEKARAAFLTRCKANSEATLGTYKGDAVLG 344
Score = 36.3 bits (80), Expect = 0.029
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQG 717
PGIKVDKG + + G+E E TTQG
Sbjct: 100 PGIKVDKGTIEVAGTEKETTTQG 122
>06_03_0718 +
23840198-23840409,23841368-23841518,23842190-23842294,
23843476-23843608,23844164-23844849,23844937-23845299
Length = 549
Score = 260 bits (637), Expect = 9e-70
Identities = 128/216 (59%), Positives = 152/216 (70%), Gaps = 1/216 (0%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGR-NTPSYQAIQENANVLARYASICQSQRIVPIV 536
D L RCA+Y + G FAKWR VLKIG PS A+++NA LARYA ICQ +VPIV
Sbjct: 315 DSLGARCAKYYEAGARFAKWRAVLKIGAAGEPSELAVKQNAEGLARYALICQENGLVPIV 374
Query: 535 EPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPN 356
EPE+L DG HD+ VTE VLAAVYK+LNDH V LEGTLLKPNMVT G K
Sbjct: 375 EPEILTDGAHDIKTCAAVTERVLAAVYKSLNDHKVLLEGTLLKPNMVTPGSDSPKVGA-E 433
Query: 355 DVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQ 176
+ TV AL RTVP AVPG+ FLSGGQSEEEAS +LNA+N +++ +PW LTFS+GRALQ
Sbjct: 434 VIGEYTVAALRRTVPPAVPGIVFLSGGQSEEEASQNLNAMNKLEVLKPWTLTFSFGRALQ 493
Query: 175 ASVLRAWGGKTENILAGQQELIKRAKANGQASLGKY 68
S ++ WGGK EN+ A Q + R KAN +A+LGKY
Sbjct: 494 QSTIKKWGGKKENVAAAQAAFLARCKANSEATLGKY 529
Score = 36.7 bits (81), Expect = 0.022
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGL 714
PGIKVDKG V + G+ E TTQGL
Sbjct: 291 PGIKVDKGTVDIAGTNGETTTQGL 314
>08_01_0142 - 1121762-1122822,1123087-1123114
Length = 362
Score = 257 bits (629), Expect = 9e-69
Identities = 134/238 (56%), Positives = 159/238 (66%), Gaps = 4/238 (1%)
Frame = -1
Query: 748 SDRKTNAPPRVWDDLAQRCAQYKKDGCHFAKWRCVLKIGR--NTPSYQAIQENANVLARY 575
+DR+T D L +RC +Y G FAKWR VL IGR + PS A+ NA LARY
Sbjct: 114 TDRETTTQGH--DGLGERCRRYYAAGARFAKWRAVLSIGRASSRPSQLAVDANAQGLARY 171
Query: 574 ASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMV 395
A ICQ +VPIVEPE+L DGEH ++ +VTE VLAA YKAL+DHHV LEGTLLKPNMV
Sbjct: 172 AIICQENGLVPIVEPEILVDGEHGIEACAEVTERVLAACYKALSDHHVLLEGTLLKPNMV 231
Query: 394 TAGQSCKKTYTPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDL-- 221
T G + P VA TV ALLRTVP AVP + FLSGGQSEEEA+ +LNA+N V
Sbjct: 232 TPGSDAARA-PPEVVAEHTVRALLRTVPPAVPAIVFLSGGQSEEEATRNLNAMNQVASRG 290
Query: 220 KRPWVLTFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVAGSVTG 47
K+PW LTFS+GRALQ S L+AW GK EN+ Q L+ R +AN QA+LG Y + G
Sbjct: 291 KKPWSLTFSFGRALQQSTLKAWAGKAENVGKAQAALLARCRANSQATLGAYAGDAAAG 348
Score = 33.5 bits (73), Expect = 0.20
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = -3
Query: 782 GIKVDKGVVPLFGSEDECTTQG 717
GIKVDKG V L G++ E TTQG
Sbjct: 101 GIKVDKGTVELAGTDRETTTQG 122
>11_01_0448 -
3469398-3469676,3470015-3470284,3470386-3470476,
3470581-3470690,3470867-3471136,3471768-3471914
Length = 388
Score = 209 bits (511), Expect = 2e-54
Identities = 110/217 (50%), Positives = 141/217 (64%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
D LA R A Y + G FAKWR V+ I N PS A++E A LARYA+I Q +VPIVE
Sbjct: 157 DGLASREAAYYQQGARFAKWRTVVSIP-NGPSELAVKEAAWGLARYAAISQDNGLVPIVE 215
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPND 353
PE+L DGEH +DR +V + V A + + +++V EG LLKP+MVT G CK TP
Sbjct: 216 PEILLDGEHGIDRTFEVAQKVWAETFFYMAENNVMFEGILLKPSMVTPGAECKDRATPEQ 275
Query: 352 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 173
V+ T+ L R +P AVPG+ FLSGGQSE EA+ +LNA+N PW ++FSY RALQ
Sbjct: 276 VSDYTLKLLHRRIPPAVPGIMFLSGGQSEVEATQNLNAMN--QGPNPWHVSFSYARALQN 333
Query: 172 SVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVA 62
+ L+ WGG+ EN+ A Q L+ RAKAN A LGKY +
Sbjct: 334 TCLKTWGGQPENVKAAQDALLLRAKANSLAQLGKYTS 370
Score = 37.9 bits (84), Expect = 0.009
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGL 714
PGIKVDKG+VPL GS +E QGL
Sbjct: 133 PGIKVDKGLVPLAGSNNESWCQGL 156
>12_01_0448 +
3537661-3538018,3538920-3539047,3539740-3539763,
3542051-3542317,3542994-3543530
Length = 437
Score = 95.5 bits (227), Expect = 4e-20
Identities = 63/164 (38%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Frame = -1
Query: 550 IVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKK 371
+VPIVEPE+L DGEH ++R +V + V A + +++++V LEG LLKP+MVT G K
Sbjct: 263 LVPIVEPEILLDGEHRVERTFEVAQKVWADTFFHMSENNVMLEGILLKPSMVTPGAESKD 322
Query: 370 -TYTPNDVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAIN-AVDLKRP--WVL 203
TP VA A+ R PA+ +LNA+N A P W +
Sbjct: 323 GAATPEQVAAAS----RRRCPASCSS----PAASRRWRRRGNLNAMNQAAPSANPWRWRV 374
Query: 202 TFSYGRALQASVLRAWGGKTENILAGQQELIKRAKANGQASLGK 71
+FSY RALQ + L+ WG + EN+ A Q EL A+ Q G+
Sbjct: 375 SFSYARALQNTCLKTWGSRRENVAAAQGELAGAARQVHQRRRGR 418
Score = 34.3 bits (75), Expect = 0.12
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGL 714
PGI VDKG+VPL GS+ E GL
Sbjct: 240 PGINVDKGLVPLAGSDPESLEDGL 263
>04_03_0368 + 15004949-15005659,15005789-15005848
Length = 256
Score = 36.7 bits (81), Expect = 0.022
Identities = 23/60 (38%), Positives = 26/60 (43%)
Frame = +1
Query: 427 GTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWRFPG 606
G RGG RP P+G G G AR R RQ+ G RWR + E WR G
Sbjct: 52 GKRGGAEPARAAAAARPPDPAGAG-GEAR---RRSGRQIRHGRGEARWRTTDLEPWRRGG 107
>10_08_0948 +
21754985-21755290,21756042-21756297,21756845-21756999,
21757077-21757349,21757582-21757776,21757867-21758058
Length = 458
Score = 34.3 bits (75), Expect = 0.12
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = -1
Query: 637 IGRNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAV 458
IG+ S +AIQE R SI + +R ++E E + + + + ++ K + V +
Sbjct: 164 IGKQGASIKAIQEGTGATIRVISIDERERPFYVIEDERIVEIQGETEKVLKALQAVSNHL 223
Query: 457 YKALNDHHV 431
K L DH V
Sbjct: 224 RKFLVDHSV 232
>06_01_0022 - 218860-219053,219707-220010
Length = 165
Score = 32.3 bits (70), Expect = 0.47
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 421 PRGTRGGRSAPYTRRPERPQ-SPSGRGPGRARHQVR 525
P G RGG + Y RP P SPS P R Q+R
Sbjct: 7 PYGRRGGAAPSYVPRPRAPNPSPSAPAPARPPQQLR 42
>10_06_0002 +
9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 31.9 bits (69), Expect = 0.62
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 640 SARNATWRSGSRPSCTGRSAGRGRPRPWVV 729
+A++A WR G RP+ T GR + W V
Sbjct: 27 TAKDARWRGGQRPAATPADEGRSQEAAWPV 56
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 31.9 bits (69), Expect = 0.62
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -1
Query: 343 ATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQASV 167
A VTALL +VP + P SGG+ + + LN + +D+ R ++L G ++ V
Sbjct: 131 AAVTALLCSVPISGPSDAASSGGKDKAKKPTRLNIV-GLDITRQFLLHIVSGTDVEKDV 188
>02_02_0628 +
12365109-12365150,12366315-12366411,12366489-12366554,
12367884-12367963,12368051-12368125,12368232-12368381,
12369816-12369881,12370141-12370206,12370653-12370763,
12370917-12371003,12371087-12371193,12372141-12372255,
12372472-12372537,12373521-12373615,12373700-12373880
Length = 467
Score = 31.5 bits (68), Expect = 0.82
Identities = 27/59 (45%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 418 SPRGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQ-LAR-CVGSDRWR-RSGR 585
+P T G RS P T P S GRG G AR+Q+ RA + L+R GS R R R GR
Sbjct: 403 APTTTGGKRSQPATNG-NTPASKKGRGEGAARNQLVNRAFEGLSRGGRGSGRGRGRGGR 460
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 30.7 bits (66), Expect = 1.4
Identities = 25/82 (30%), Positives = 33/82 (40%)
Frame = +1
Query: 505 RARHQVRLRARQLARCVGSDRWRRSGREHWRFPG*LGTRGCCGQSSARNATWRSGSRPSC 684
R H+ R R + R G RR GR FP R G+ + +A G+ C
Sbjct: 31 RPVHRGRGRGGRRRRSGGDATGRRRGRVSGDFPA--KRRADRGRGGSCDAGRGGGAAGGC 88
Query: 685 TGRSAGRGRPRPWVVHSSSDPN 750
TGR + RP P + D N
Sbjct: 89 TGRDSDFTRPPPGQANWFPDSN 110
>07_01_1073 + 9566727-9566963,9566992-9567180
Length = 141
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/34 (41%), Positives = 15/34 (44%)
Frame = +1
Query: 613 GTRGCCGQSSARNATWRSGSRPSCTGRSAGRGRP 714
GT CG S + TW GSR R RG P
Sbjct: 78 GTSDGCGSGSGEDGTWSGGSREDGQRRCRCRGSP 111
>02_02_0415 -
9981345-9981440,9981716-9981784,9982035-9982155,
9982441-9982622,9983320-9984921
Length = 689
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/91 (25%), Positives = 32/91 (35%)
Frame = +1
Query: 424 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWRFP 603
RG GG + P+ R +RP Q R L + RW R G R
Sbjct: 87 RGRHGGGARPWRRGEDRPARGGQHAADDGEVQGTRRGGDLKQRREGRRWTR-GETQARES 145
Query: 604 G*LGTRGCCGQSSARNATWRSGSRPSCTGRS 696
G G G C + + R G + + G +
Sbjct: 146 GKAGNSGRCQSNGSGGNASRKGKKKAKGGEN 176
>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
Length = 297
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Frame = +1
Query: 427 GTRGGRSAPYTRRPE--------RPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSG 582
G G +AP RRP+ RP P GR GR+RH + + G DR RSG
Sbjct: 180 GDGDGEAAPLLRRPQLRSDYSTHRPP-PGGRSRGRSRHPRKAESTS-PSISGGDRGSRSG 237
Query: 583 REHWR 597
WR
Sbjct: 238 --PWR 240
>02_05_0285 -
27498946-27499122,27499944-27500108,27500828-27500960,
27501052-27501171,27502436-27502980
Length = 379
Score = 29.9 bits (64), Expect = 2.5
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +1
Query: 460 RRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRW-RRSGREHWRFPG*LGTRGCCGQ 636
R P G G G RH LR L G+ R+ RRSGR R P L Q
Sbjct: 14 RLDSAPLLGGGGGGGGRRHGGALRRPSLR---GAARFLRRSGRRAMREPSLLVREAAADQ 70
Query: 637 SSARNATWRSGSRP 678
R A W + SRP
Sbjct: 71 LEERQADW-AYSRP 83
>11_07_0003 - 27182551-27183054
Length = 167
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 613 GTRGCCGQSSARNATWRSGSRPSCTGRSAGRGRPRPWVVHSSSDPNSGTTPLSTLMPG 786
G G S + RS S +G S+G R V S+ P+SG P +T PG
Sbjct: 25 GASGAAAGGSPSSGGGRSSGGSSSSGSSSGGSSTRSPV--GSASPSSGRNPATTGSPG 80
>09_02_0278 + 6691685-6692188
Length = 167
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = +1
Query: 613 GTRGCCGQSSARNATWRSGSRPSCTGRSAGRGRPRPWVVHSSSDPNSGTTPLSTLMPG 786
G G S + RS S +G S+G R V S+ P+SG P +T PG
Sbjct: 25 GASGAAAGGSPSSGGGRSSGGSSSSGSSSGGSSTRSPV--GSASPSSGRNPATTGSPG 80
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 29.5 bits (63), Expect = 3.3
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = -1
Query: 436 HVYLEGTLLKPNMVTAGQSCKKTYTPNDVARATVTALLRTVPA 308
+V E + LKP+MVT + ++++T N + T +LR++ A
Sbjct: 438 YVAEENSFLKPSMVTERSALQESFTTNKLQSFQETPVLRSMKA 480
>06_01_0093 - 776567-777335,777449-777747
Length = 355
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 718 PWVVHSSSDPNSGTTPLSTLMP 783
P+ HSSSDP S + PL +L+P
Sbjct: 67 PYSHHSSSDPMSASNPLVSLLP 88
>01_07_0274 + 42428947-42429108,42429405-42430178
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +3
Query: 108 LISSCCPARMFSVFPPQARSTE-AWRARP*LNVRTQGLLRSTALIAFRCTEASSSD*PPE 284
L+ C PA +PP A+ + R T G ++ L+A TEAS D PP
Sbjct: 19 LLLLCAPAASAGDYPPTAKGLSYGFYQRSCPKAETIGC-DASVLLARTATEASELDAPPN 77
Query: 285 RNVTP 299
+ P
Sbjct: 78 ETIRP 82
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 625 CCGQSSARNATWRSGSR--PSCTGRSAGRGRP 714
C G S+ +A + +R P+CTGRS+ G P
Sbjct: 90 CAGSSTTASAPTSTSTRAAPACTGRSSSTGLP 121
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/72 (29%), Positives = 30/72 (41%)
Frame = -3
Query: 752 LFGSEDECTTQGLGRPRPALRPVQEGRLPLRQVALRAEDWPQHPLVPSYPGKRQCSRPLR 573
LFGS + LGR R + RP + L +++L ++ L + L
Sbjct: 160 LFGSRSKANVFVLGRKRVSYRPPGTEQNLLNEISLNLKEKSFGLLFGRSGSGKTTLLQLL 219
Query: 572 LHLSEPTHRANC 537
LSEPTH C
Sbjct: 220 AGLSEPTHGTIC 231
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 630 ATPPRTKLSRKTPMFSPATPPSVRANASCQLSSPKSYLMASTTWTAPRR*LRSFWPP 460
A P +++S T SP++ PS +++S S+P +A+ + +APRR PP
Sbjct: 96 AAAPSSRISAPT---SPSSAPSSPSSSSSSSSTPVRDAVAAESQSAPRRLAGGRAPP 149
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 28.7 bits (61), Expect = 5.8
Identities = 30/77 (38%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 481 SPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWRFPG*LGTRGCCGQSSARN-AT 657
SP P RAR R R+ + GS R +RSG + WR G G R+ A
Sbjct: 379 SPFPLSPQRAR-----RRRRRSSGGGSVR-KRSGAQ-WRSGSARRRSGGGGSVRKRSCAQ 431
Query: 658 WRSGSRPSCTGRSAGRG 708
WRSGS S G +A RG
Sbjct: 432 WRSGSARSGGGGAARRG 448
>01_07_0290 - 42542201-42542359,42542443-42542551,42542729-42543516,
42543601-42543744,42543840-42544013,42544056-42544369,
42544467-42544636,42544916-42545043,42545125-42545185,
42545473-42545642,42545783-42547387,42547479-42547631,
42547747-42547905,42548066-42548236,42548357-42548404,
42548509-42548624,42548885-42549029,42549122-42549220
Length = 1570
Score = 28.7 bits (61), Expect = 5.8
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +1
Query: 424 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGREHWR 597
RG GGR + P R S S R G R + A R G++R R GR W+
Sbjct: 1383 RGQGGGREVWKSEGPHRGGSSSNRNQGGGRAVWKSEASH--RGSGNNRNRGGGRAVWK 1438
>01_06_0352 +
28638453-28639391,28639486-28640034,28640388-28641195,
28641279-28641389,28641556-28641683
Length = 844
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 490 GRGPGRARHQVRLRARQLARCVGSDRWRRSGR--EHWRFPG*LGTR 621
G GPGR R+ R + ++R R GR WR P +GT+
Sbjct: 135 GGGPGRGSSSSGATGRRRQRAMATNRGRDRGRGGRGWRVPRSVGTQ 180
>07_03_1003 +
23239829-23240121,23240257-23240349,23240785-23240993,
23241585-23241729,23241809-23241881,23242165-23242311,
23242411-23242536,23242653-23242712
Length = 381
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 628 CGQSSARNATWRSGSRPSCTGRSAGRGRPRPWVVHSSSDPNSGTTP 765
C SSAR TWR +R S + R R S +DP + P
Sbjct: 33 CPASSARRTTWRPRARLSSGNAARARARLLRVEASSMADPVEESLP 78
>07_01_1093 + 10033403-10033984
Length = 193
Score = 28.3 bits (60), Expect = 7.6
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Frame = +1
Query: 499 PGRARHQVRLRARQLARCVGSDRWRRSGREHWRFPG*LGTRGCCGQSSAR----NATWRS 666
P RAR A G + R SG E W PG RG + AR A+ R
Sbjct: 12 PKRAREVAAKEEHATANGSGGEAGRYSGEEQW--PG----RGLEAREPARARIQRASGRE 65
Query: 667 GSRPS--CTGRSAGRGRPR 717
RP+ T R GR R R
Sbjct: 66 AERPARRLTSRCRGRNRQR 84
>06_03_0139 + 17130980-17131594,17131740-17132009
Length = 294
Score = 28.3 bits (60), Expect = 7.6
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = -3
Query: 224 PQEALGSDVQLRARPPGFGAPRLGREDREHSRRTAGADQAC*GQRSSFSREVRRWISHRL 45
P+ A S Q RARPP +P G E E+S++ ++ +SS ++ R IS RL
Sbjct: 161 PRSAAASGSQRRARPP--PSPLQGSELHEYSKKQRANNKE---TQSSAAKSRRERISERL 215
>04_04_0920 + 29429114-29430934
Length = 606
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -1
Query: 631 RNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEH 506
R TPS ++ LA + C P++EP+ LPD H
Sbjct: 18 RRTPSQTSLWTIRRQLASFVLHCSRSCASPLLEPKNLPDEFH 59
>02_04_0466 -
23149906-23150046,23150129-23150279,23151684-23151785,
23151893-23152110,23152203-23152325,23152863-23152991,
23153191-23153274,23154009-23154104,23154735-23154816,
23155047-23155117,23155269-23155363,23156090-23156276,
23156586-23156757,23157800-23157948,23158578-23158701,
23158836-23158991,23159101-23159247,23160470-23160489
Length = 748
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 669 QPSFLYWAQRWARSSQTLGGAFVFRSEQRDDT 764
QP+ L WA S AFV R E+ DDT
Sbjct: 46 QPTPLKQPPEWASSGSVREKAFVMRVEEEDDT 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,805,322
Number of Sequences: 37544
Number of extensions: 582921
Number of successful extensions: 2694
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2682
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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