Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b16
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 319 2e-87
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 319 2e-87
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 296 1e-80
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 291 5e-79
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 180 1e-45
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 3.9
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 3.9
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 28 6.8
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 319 bits (783), Expect = 2e-87
Identities = 156/222 (70%), Positives = 175/222 (78%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPND 353
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS +
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQSSASKASHEA 251
Query: 352 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 173
+ ATVTAL R VPAAVPG+TFLSGGQSE +A+ +LNAIN+V L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 172 SVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVAGSVTG 47
SVL+AWGGK ENI A Q+ L+ R+KANG ASLGKY G
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAGEDAAG 353
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGLGR 708
PGIK+D GVVPL G+ E TTQGL +
Sbjct: 108 PGIKLDLGVVPLAGTIGEGTTQGLDK 133
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 319 bits (783), Expect = 2e-87
Identities = 156/222 (70%), Positives = 175/222 (78%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPND 353
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS +
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQSSASKASHEA 251
Query: 352 VARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQA 173
+ ATVTAL R VPAAVPG+TFLSGGQSE +A+ +LNAIN+V L +PW LTFSYGRALQA
Sbjct: 252 IGLATVTALRRGVPAAVPGITFLSGGQSELDATANLNAINSVQLGKPWKLTFSYGRALQA 311
Query: 172 SVLRAWGGKTENILAGQQELIKRAKANGQASLGKYVAGSVTG 47
SVL+AWGGK ENI A Q+ L+ R+KANG ASLGKY G
Sbjct: 312 SVLKAWGGKDENIAAAQKTLLHRSKANGDASLGKYAGEDAAG 353
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGLGR 708
PGIK+D GVVPL G+ E TTQGL +
Sbjct: 108 PGIKLDLGVVPLAGTIGEGTTQGLDK 133
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 296 bits (726), Expect = 1e-80
Identities = 145/216 (67%), Positives = 166/216 (76%), Gaps = 1/216 (0%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
DDL RCAQYKKDG FAKWRCV KI TPS A++E A+ LARYASICQ +VPIVE
Sbjct: 129 DDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLARYASICQQNGLVPIVE 188
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPN- 356
PE+LPDGEH L R QK+TE VL+ VY ALN+HHV+LEGTLLKPNMVT+GQS N
Sbjct: 189 PEILPDGEHCLARGQKITETVLSYVYHALNEHHVFLEGTLLKPNMVTSGQSFTGEKPSNA 248
Query: 355 DVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRALQ 176
D+ ATVTAL R VP+AVPGV FLSGGQSEE+A+++LNAIN V K+PW LTFSYGRALQ
Sbjct: 249 DIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRALQ 308
Query: 175 ASVLRAWGGKTENILAGQQELIKRAKANGQASLGKY 68
AS L W GK ENI A Q+ L+ RA+ N AS+GKY
Sbjct: 309 ASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKY 344
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGL 714
PGIKVDKGVVP+ G+ E TTQGL
Sbjct: 105 PGIKVDKGVVPMAGTIGEGTTQGL 128
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 291 bits (713), Expect = 5e-79
Identities = 144/217 (66%), Positives = 166/217 (76%), Gaps = 2/217 (0%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENA-NVLARYASICQSQRIVPIV 536
DDL RCAQYKKDG FAKWRCV KI TPS A++E A N+ +RYASICQ +VPIV
Sbjct: 129 DDLNARCAQYKKDGAQFAKWRCVHKISSTTPSVTALKEIASNLGSRYASICQQNGLVPIV 188
Query: 535 EPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQSCKKTYTPN 356
EPE+LPDGEH L R QK+TE VL+ VY ALN+HHV+LEGTLLKPNMVT+GQS N
Sbjct: 189 EPEILPDGEHCLARGQKITETVLSYVYHALNEHHVFLEGTLLKPNMVTSGQSFTGEKPSN 248
Query: 355 -DVARATVTALLRTVPAAVPGVTFLSGGQSEEEASVHLNAINAVDLKRPWVLTFSYGRAL 179
D+ ATVTAL R VP+AVPGV FLSGGQSEE+A+++LNAIN V K+PW LTFSYGRAL
Sbjct: 249 ADIGLATVTALQRGVPSAVPGVVFLSGGQSEEDATLNLNAINQVSGKKPWALTFSYGRAL 308
Query: 178 QASVLRAWGGKTENILAGQQELIKRAKANGQASLGKY 68
QAS L W GK ENI A Q+ L+ RA+ N AS+GKY
Sbjct: 309 QASCLAKWAGKDENIAAAQEVLLHRAQVNSLASVGKY 345
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGL 714
PGIKVDKGVVP+ G+ E TTQGL
Sbjct: 105 PGIKVDKGVVPMAGTIGEGTTQGL 128
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 180 bits (437), Expect = 1e-45
Identities = 86/111 (77%), Positives = 93/111 (83%)
Frame = -1
Query: 712 DDLAQRCAQYKKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVE 533
D LA+R A +KK GC FAKWRCVL IG +TPS+ + ENANVLARYASICQ+ +VPIVE
Sbjct: 132 DKLAERAAAFKKGGCGFAKWRCVLNIGTHTPSHLGMLENANVLARYASICQANGLVPIVE 191
Query: 532 PEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEGTLLKPNMVTAGQS 380
PEVL DGEHDL RAQKVTE VLA VYKAL DHHVYLEGTLLKPNMVT GQS
Sbjct: 192 PEVLCDGEHDLARAQKVTEQVLAFVYKALADHHVYLEGTLLKPNMVTPGQS 242
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = -3
Query: 785 PGIKVDKGVVPLFGSEDECTTQGLGR 708
PGIK+D GVVPL G+ E TTQGL +
Sbjct: 108 PGIKLDLGVVPLAGTIGEGTTQGLDK 133
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 424 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR 585
R RS +R R +SP+ R +RH+ R + R +R R R SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 424 RGTRGGRSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWRRSGR 585
R RS +R R +SP+ R +RH+ R + R +R R R SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 412 GVSPRGTRGGRSAPYTRRPERPQSPSGRG--PGRARHQ 519
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 412 GVSPRGTRGGRSAPYTRRPERPQSPSGRG--PGRARHQ 519
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 442 RSAPYTRRPERPQSPSGRGPGRARHQVRLRARQLARCVGSDRWR-RSGR 585
R+ TRR ++PS R+R + R R+R +R S R R RS R
Sbjct: 47 RTNSLTRRRSSTKAPSSARQSRSRSRSRSRSRSKSRSTSSRRSRSRSAR 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,872,275
Number of Sequences: 27780
Number of extensions: 410411
Number of successful extensions: 1571
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1567
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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