Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b15
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    48   2e-06
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    43   4e-05
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    36   0.006
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.7  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    27   3.6  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   3.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   6.3  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   6.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase |Schizosac...    25   8.4  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   8.4  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   8.4  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
 Frame = -3

Query: 699 NKILGVVRLQQTAEGPLVAD--GSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXX 526
           +K+ GVV  +Q  +   V+     +   +  + G H+++ GD + GC S           
Sbjct: 12  SKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTS--AGPHFNPEG 69

Query: 525 XXXXXXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR 355
                         DLGN+ +DA G       D V+ ++    +IGR++ +    DD G+
Sbjct: 70  KTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAGEDDLGK 129

Query: 354 GDG-TSRVDGNSGPILACGII 295
           G    S   GN+G   ACG+I
Sbjct: 130 GTSEESLKTGNAGARNACGVI 150


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
 Frame = -3

Query: 303 GIIARSAGIFQNPKRICACDGVVVWDERDKPLA---GSGRRGQGDRAPSE 163
           GII+RSAG+ QN K+ICAC G  +W E  +  +   GS    + D +PSE
Sbjct: 186 GIISRSAGLGQNTKQICACTGKSLWTEHAELKSVNEGSSCCSKKDSSPSE 235


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 19/58 (32%), Positives = 25/58 (43%)
 Frame = +1

Query: 124 SFRGFACLATAAPLAGGAVPLTSPPAARQRFISFIPHHYPVAGAYPLRILKDSRRPGY 297
           S+   A  AT A  A  A P  +P A++ R     P  YP  G YP +      +P Y
Sbjct: 65  SYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPPQGGYPQQPYYYPNQPNY 122


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 708 SCCNKILGVVRLQQTAEGPLVADG 637
           +CC  ++G + L     GPL+ DG
Sbjct: 678 ACCENVIGYMPLPLGVAGPLIIDG 701


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +2

Query: 380 VTPIDLPITSHTFRTSSTILNAALPFASAVMFPRSPACL 496
           V  I  P TS   R SS    AA+P A + M  RSP+ L
Sbjct: 150 VATITKPSTSSIARMSSNARIAAIPRAKSSMAVRSPSRL 188


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 357 RGDGTSRVDGNSGPILACGIIAR 289
           RGDGT  + G   PI+A G I R
Sbjct: 403 RGDGTLEIRGYHKPIMAAGGIGR 425


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
            1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
 Frame = +1

Query: 595  YVEPVPPGA*SVD-AAVSHQR---ALG-RLLQP--DHAQDLIAARLVRD 720
            Y EP PPG+   D A+VS +R   +LG R L P  D   D+ + RL RD
Sbjct: 866  YREPTPPGSSDSDTASVSKKRVDFSLGTRHLMPAFDDVADIGSKRLGRD 914


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 516 APRAVPPTDYNAPLWNCSPDLNPRTH 593
           APR +   D N P W   P+L+ R H
Sbjct: 2   APRTIVKVDLNKPAWE-QPNLHNRWH 26


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 401  ITSHTFRTSSTILNAALPFASAVMFPRSP 487
            + S T  TSST+LN++ P  S+     SP
Sbjct: 1626 LNSSTPITSSTVLNSSTPITSSTALNTSP 1654


>SPBC19C2.15c ||SPBC2F12.16|phosphoprotein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 208

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 183 PDLSSRCPPAVYLVHPTPLPRRRRISASDSER 278
           P L S  PP +Y+++   L +RR+IS   + R
Sbjct: 175 PILMSIYPPGLYIMYTHMLAQRRKISKRAAAR 206


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +1

Query: 445 SSAVCVGCNVSEIAGVPPIRGIAGPPVRSPRRI 543
           S    V CNVSE   V  I GIA   V+   RI
Sbjct: 725 SVVAAVACNVSEGDPVTRITGIANQRVKECNRI 757


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 321 GPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPLAGSGRRGQ 184
           G I+A G++     I +  KR+   +        D  L G G RGQ
Sbjct: 399 GAIVAAGVVIGDNTIIEKNKRLTTFESHSQGTLNDPSLVGIGGRGQ 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,616
Number of Sequences: 5004
Number of extensions: 52066
Number of successful extensions: 283
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)