Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b15
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 80 2e-15
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 74 1e-13
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 74 1e-13
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 73 2e-13
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 51 8e-07
01_02_0012 + 10157964-10158172,10159101-10159182 31 0.94
03_01_0560 + 4162206-4162607 31 1.2
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205... 31 1.2
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 30 1.6
02_04_0221 - 21021886-21022144,21022227-21022345,21022681-210229... 30 1.6
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 30 1.6
04_04_0636 + 26804533-26805036 30 2.2
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 30 2.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 29 2.9
07_01_0614 - 4545306-4545833 29 2.9
11_06_0610 - 25449085-25453284 29 3.8
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520 29 3.8
05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475 29 3.8
11_01_0472 + 3656471-3656780,3656902-3656996 29 5.0
08_02_0830 - 21617485-21618198 29 5.0
08_01_1084 - 11120719-11120950,11121035-11121133,11122446-111228... 29 5.0
05_01_0340 - 2677082-2678266 29 5.0
03_05_0844 + 28139996-28140736 29 5.0
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422... 28 6.6
04_03_0227 + 12979635-12980363,12980439-12980474,12980604-129808... 28 6.6
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 28 6.6
12_02_0653 + 21545862-21546584,21546661-21546696,21547182-215474... 28 8.7
11_04_0353 + 16690594-16691502 28 8.7
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 28 8.7
09_04_0416 - 17399059-17399777,17400560-17400704 28 8.7
08_02_0948 + 22917130-22917166,22917319-22917923 28 8.7
08_02_0829 - 21604845-21605588 28 8.7
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 28 8.7
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 28 8.7
02_03_0101 + 15233783-15234601 28 8.7
02_01_0302 - 2021221-2023305 28 8.7
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 79.8 bits (188), Expect = 2e-15
Identities = 52/156 (33%), Positives = 72/156 (46%)
Frame = -3
Query: 693 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 514
I GVVRL Q + + + GLSPG+HG + E GDL++G S
Sbjct: 176 IFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYNPSDYRSNKP 235
Query: 513 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVWDVIGRSMGVTERGDDCGRGDGTSRV 334
LG + A G A F + LKV D+IGRS+ + D
Sbjct: 236 LGD--------LGTLEAGEKGEAQFSASKEKLKVVDLIGRSIALYATED----------- 276
Query: 333 DGNSGPILACGIIARSAGIFQNPKRICACDGVVVWD 226
S P +A +IARSAG+ +N K++C CDGV +W+
Sbjct: 277 --RSDPGIAAAVIARSAGVGENYKKLCTCDGVTIWE 310
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 74.1 bits (174), Expect = 1e-13
Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Frame = -3
Query: 699 NKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXX 520
+++ GVV L Q +GP + + GL+PG HG H++E GD + GC I
Sbjct: 62 SQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGC--ISTGPHFNPNNLT 119
Query: 519 XXXXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-G 352
DLGNI A+A G A IVD + + V+GR+ V E DD G+ G
Sbjct: 120 HGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHELEDDLGKGG 179
Query: 351 DGTSRVDGNSGPILACGII 295
S GN+G LACG++
Sbjct: 180 HELSLSTGNAGGRLACGVV 198
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 74.1 bits (174), Expect = 1e-13
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = -3
Query: 693 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 514
+ G + Q +GP GS+ GL PG HG H++ GD + GC S
Sbjct: 132 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMS--TGPHYNPAGKEHG 189
Query: 513 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKVW---DVIGRSMGVTERGDDCGR-GDG 346
DLGN+TA +G A +VD + + +IGR++ V DD G+ G
Sbjct: 190 APEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHADPDDLGKGGHE 249
Query: 345 TSRVDGNSGPILACGII 295
S+ GN+G +ACGII
Sbjct: 250 LSKTTGNAGGRVACGII 266
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 72.9 bits (171), Expect = 2e-13
Identities = 47/137 (34%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Frame = -3
Query: 693 ILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXX 514
+ G + Q +GP GS+ GL PG HG HV+ GD + GC S
Sbjct: 14 VKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMS--TGPHFNPTGKEHG 71
Query: 513 XXXXXXXXXXDLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGR-GDG 346
DLGNITA A+G A + D + + +IGR++ V DD G+ G
Sbjct: 72 APQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHADPDDLGKGGHE 131
Query: 345 TSRVDGNSGPILACGII 295
S+ GN+G +ACGII
Sbjct: 132 LSKTTGNAGGRVACGII 148
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 51.2 bits (117), Expect = 8e-07
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 3/141 (2%)
Frame = -3
Query: 672 QQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIXXXXXXXXXXXXXXXXXXXXX 493
Q + G G + GL+PG HG H++ GD + GCNS
Sbjct: 31 QDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNS--TGPHFNPHNKSHGAPSDDER 88
Query: 492 XXXDLGNITADANGRAAFRIVDDVLKV---WDVIGRSMGVTERGDDCGRGDGTSRVDGNS 322
DLGNI A+ +G A I D + + ++GR++ V DD GRG N
Sbjct: 89 HVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRGQ-----KSNC 143
Query: 321 GPILACGIIARSAGIFQNPKR 259
+ C I AR + + K+
Sbjct: 144 QSLFLCCIYARFVVVMNSVKQ 164
>01_02_0012 + 10157964-10158172,10159101-10159182
Length = 96
Score = 31.1 bits (67), Expect = 0.94
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +3
Query: 159 PPRWGRGPPDLSSRCPPA--VYLVHPTPLPRRRRISASDSERFPPTW-L*CH 305
P + PP + RC PA + PLPRRR +S D R PP+ + CH
Sbjct: 3 PTPFAHRPPTI--RCHPASIAVTIGCRPLPRRRLLSLLDQGRQPPSGVIHCH 52
>03_01_0560 + 4162206-4162607
Length = 133
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 61 ACFTVATPTVPCPTSVPFVITSFRGFACLATAAPLAGGAVPLTSPPAARQR-FISF-IPH 234
AC VA TV C P G A L P + VP+ PP R F+SF I
Sbjct: 6 ACAAVAGATVACLPGAPAGAAFGLGLAGLLFLLPFSSLYVPMLRPPVDMSRPFLSFTIGT 65
Query: 235 HYPVAGAY 258
+A AY
Sbjct: 66 ALALAAAY 73
>01_05_0607 +
23619271-23619426,23619479-23619552,23619917-23620594,
23620711-23620815,23620877-23621003,23621613-23621773,
23621858-23622028,23622195-23622324,23622532-23622747,
23626821-23627348
Length = 781
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 209 WRAAGGEVRGTAPPARGAAVARQAKPRKEVITKGTDVGQGTVGVATVKH 63
W A G + +APPAR + R+ +PR + G D+ G + V H
Sbjct: 14 WGAEGLALLASAPPARDKGLRRRRRPR--MTAHGRDIDDGQLFVRVPVH 60
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -3
Query: 720 VSDQSCCNKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGC 565
+ DQ K++ + + A + ++ GL P HG HV+ G + GC
Sbjct: 15 LQDQERAEKVM-LKAVDVLASSLITVKENVSGLKPVLHGFHVHALGGTTNGC 65
>02_04_0221 -
21021886-21022144,21022227-21022345,21022681-21022920,
21023064-21023171,21023272-21023331,21023991-21024066,
21024155-21024360,21024722-21024784,21024925-21025012,
21025515-21026015,21027206-21027603
Length = 705
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +3
Query: 156 SPPRWGRGPPDLSSRCPPAVYLVHPTPLPR 245
+P RWG G + RCP H PLPR
Sbjct: 56 TPTRWGAGASAVPPRCPGPQDQHHGLPLPR 85
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 492 ASDPGDRRAPRAVPPTDYNAPLWNCSPDLNPRTHIRGA---RASRGLVRRCCRQ 644
A+ P D RA RAVPP + + +PD+ R R R + R CR+
Sbjct: 243 ATPPPDTRATRAVPPDHFTYSQDHVNPDIRGRRFFRCPNYDRERKAAYERQCRE 296
>04_04_0636 + 26804533-26805036
Length = 167
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 716 RTNRAAIRSWAWSGCSRRPRARWWLTAASTD*APGG 609
R R + +W W+ C RR R R +L +T GG
Sbjct: 10 RLGRKLLSAWRWALCCRRRRRRGYLRLQTTSGGCGG 45
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1
Query: 206 RAAGGEVRGTAPPARGAAVARQAKPRKEVITKGTDVGQGTVGVATVKH 63
RA GG VR + GAA+AR++ V+++G++ G GVA K+
Sbjct: 48 RACGGSVRSGSRSGLGAAIARRSAGFLLVLSRGSE-GSDFGGVAWPKN 94
>08_02_0104 + 12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 29.5 bits (63), Expect = 2.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 424 IIDNPECSSAVCVGCNVSEIAGVPPIR 504
++++ ECSS C+ V VPP++
Sbjct: 937 LVEDEECSSTYCISFRVKNAEAVPPVK 963
>07_01_0614 - 4545306-4545833
Length = 175
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 144 PCHSSPPRWGRGPPDLSSRC-PPAVYLVHPTPLPRRRRIS 260
PC PP R P ++R PP + P PLPR R S
Sbjct: 8 PCLRPPPLLRRAFPSPATRLLPPQTLALRPLPLPRGLRSS 47
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +3
Query: 144 PCHSSPPRWGRGPPDLSSRCPPAVYLVHPT-PLPRRRRISASDSERFPPT 290
P SSPP PP + PP+ HPT P P + E PPT
Sbjct: 770 PPKSSPPEEKSPPPHSPEKSPPSE--AHPTSPPPSEKSPPTPAEESSPPT 817
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 153 SSPPRWGRGPP-DLSSRCPPAVYLVHPTPLPRRRRISASDSERFPPT 290
SSPP G+ PP +S PP V H TP P + A +S PPT
Sbjct: 547 SSPPPEGKSPPTPTASHSPPPVPEGH-TPSPPKSGPPAGES---PPT 589
>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
Length = 448
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 46 PYTFTACFTVATPTVPCPTSVP 111
P TAC TPT P PTS P
Sbjct: 31 PSRVTACLATPTPTPPPPTSAP 52
>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
Length = 465
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +1
Query: 46 PYTFTACFTVATPTVPCPTSVP 111
P TAC TPT P PTS P
Sbjct: 26 PSRVTACLATPTPTPPPPTSAP 47
>11_01_0472 + 3656471-3656780,3656902-3656996
Length = 134
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 138 CLPCHSSPPRWGRGPPDLSSRCPPAVYL-VHPTPLPRRRRISASDSE 275
C P SPPR P ++ R P L + P+P RRRIS S SE
Sbjct: 63 CRP-RKSPPRALIPPLTITGRLPFQPPLAIRPSPPAHRRRISVSVSE 108
>08_02_0830 - 21617485-21618198
Length = 237
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Frame = -3
Query: 360 GRGDGTSRVDGNSGPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPL--AGSGRRG 187
GR D R D + P G A S G ++P C D V WD +PL A S R
Sbjct: 123 GRADSYERWDAHKTP----GSPASSTGSSRSP---CRADSVERWDSNKRPLSRASSAERW 175
Query: 186 QGDRAP 169
++ P
Sbjct: 176 DINKKP 181
>08_01_1084 -
11120719-11120950,11121035-11121133,11122446-11122849,
11123559-11124197
Length = 457
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/57 (35%), Positives = 25/57 (43%)
Frame = +1
Query: 46 PYTFTACFTVATPTVPCPTSVPFVITSFRGFACLATAAPLAGGAVPLTSPPAARQRF 216
P T T+ + A+P P P S P S R + LA+A A A P PP F
Sbjct: 77 PSTSTSSSSAASP--PAPESPPEAPCSTRLSSSLASAILAAASASPAAPPPVRDDGF 131
>05_01_0340 - 2677082-2678266
Length = 394
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = +1
Query: 115 VITSFRGFACLATAAPLAGGAVPLTSPPAAR 207
V+ RG LA A PLA V L PPAAR
Sbjct: 126 VLLKNRGTQELAVADPLAWSCVSLPPPPAAR 156
>03_05_0844 + 28139996-28140736
Length = 246
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/33 (39%), Positives = 14/33 (42%)
Frame = -1
Query: 236 WCGMNEINRWRAAGGEVRGTAPPARGAAVARQA 138
WC + RW A G VR P A RQA
Sbjct: 44 WCSDSLARRWAKAAGGVRAPPTPTLAKAERRQA 76
>07_03_0203 + 15138864-15140452,15140629-15140726,15141924-15142235,
15142437-15142749,15144025-15146023,15147033-15147068
Length = 1448
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 608 CLPGLSPSMLPSATSGPSAVC 670
CLP LS ++PS TS P +C
Sbjct: 1140 CLPNLSHLIVPSQTSLPDGIC 1160
>04_03_0227 +
12979635-12980363,12980439-12980474,12980604-12980873,
12980962-12981099,12981347-12981795,12981885-12982055,
12982136-12982370
Length = 675
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -1
Query: 209 WRAAGGEVRGTAPPARGAAVARQAKPRKEVITKGTDVGQGTVGV 78
WR+ G R + PPA+ + A+ + P+ + K G+G + V
Sbjct: 398 WRSTAG--RTSPPPAKRSKRAKSSPPKLDTSRKAARTGRGKIKV 439
>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 28.3 bits (60), Expect = 6.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = +3
Query: 144 PCHSSPPR--WGRGPPDLSSRCPPAVYLVHPTPLPRRRRISASDSE 275
P S+PP G G P S PPA V P P+R S S+
Sbjct: 1183 PSQSAPPANTGGGGSPPPSHGSPPAPKAVQSQPAPKRSGDGGSSSD 1228
>12_02_0653 +
21545862-21546584,21546661-21546696,21547182-21547401,
21547590-21548025,21548103-21548273,21548354-21548636,
21548716-21548829,21549012-21549082,21549417-21549429
Length = 688
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1
Query: 224 NEINRWRAAGGEVRGTAPPARGAAVARQAKPRKEVITKGTDVGQGTVGV 78
+EI AA + PPA+ + A+ + P+ + K T +G G V V
Sbjct: 318 DEILTLGAARRQQAAPPPPAKRSKRAKSSPPKLDTCRKATRIGSGKVKV 366
>11_04_0353 + 16690594-16691502
Length = 302
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 138 CLPCHSSPPRWGRGPPDLSSRCPPAV-YLVHPT-PLPRRRRISAS 266
CLP ++P G PP L++ AV Y PT P R IS S
Sbjct: 40 CLPAVTAPSGSGYSPPGLAALADAAVRYATTPTVPQQSRAEISLS 84
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 159 PPRWGRGPPDLSSRCPPAVYLVHPTPLPRRRRISASDSERFP 284
PP + PPD+S PP+V + P P ++ S E P
Sbjct: 407 PPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAP 448
>09_04_0416 - 17399059-17399777,17400560-17400704
Length = 287
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 165 RWGRGPPDLSSRCPPAVYLVHPTPLPRRRR 254
RWG PPDL++ PP + P P P R R
Sbjct: 217 RWGERPPDLAA--PPP---LRPAPSPPRHR 241
>08_02_0948 + 22917130-22917166,22917319-22917923
Length = 213
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 195 SRC--PPAVYLVHPTPLPRRRRISASDSERFP 284
SRC PP ++ + P PR RR+++S R P
Sbjct: 78 SRCVAPPWIFPLSPAVRPRCRRVASSSLPRLP 109
>08_02_0829 - 21604845-21605588
Length = 247
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = -3
Query: 372 GDDCGRGDGTSRVDGNSGPILACGIIARSAGIFQNPKRICACDGVVVWDERDKPLA 205
G + GR D R D + P G A S G +P C D V WD +PL+
Sbjct: 117 GGNPGRADSCERWDAHKTP----GSPASSTGSTGSP---CRADSVERWDSSKRPLS 165
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 181 PLTSPPAARQRFISFIPHHYPVAGAYPLRILKDSRRPGYDATR 309
P + PAA + HH PV+ PL L+ RP Y++ R
Sbjct: 90 PKSRSPAASDLLDASRSHHLPVSEVIPLSALRTDYRP-YESRR 131
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 141 LPCHSSPPRWGRGPPDLSSRCPPAVYL 221
LP + PP G GP RCPP V L
Sbjct: 110 LPGAAPPPAVGGGPDPSPPRCPPFVAL 136
>02_03_0101 + 15233783-15234601
Length = 272
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 150 HSSPPRWGRGPPDLSSRCPPAVYLVHPTPLPRRRRIS 260
HS+P R ++ PP V PTP PRRRR S
Sbjct: 181 HSAPARHATASLGCAAAQPPQV---PPTPTPRRRRRS 214
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +1
Query: 439 ECSSAVCVGCNVSEIAGVPPIRGIAGP--PVRSPRRIIMP---PYGIAALT*IPGLIYVE 603
+CS A C + + G P RG GP PV SP R P P + P
Sbjct: 374 DCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSY 433
Query: 604 PVPPGA 621
P PPG+
Sbjct: 434 PAPPGS 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,376,590
Number of Sequences: 37544
Number of extensions: 517445
Number of successful extensions: 2302
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -