Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b14
         (328 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870...    34   0.030
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    29   0.65 
11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525           29   1.1  
02_02_0650 + 12644719-12645060,12645170-12645298,12646101-126465...    26   6.1  
03_02_0486 - 8811539-8811610,8811725-8812231,8812327-8812551,881...    26   8.0  

>04_03_0397 -
           15362353-15363383,15385301-15385910,15386890-15387096,
           15388287-15388313,15388397-15388471
          Length = 649

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
 Frame = +3

Query: 96  PVDSHVCRAITKRRRNEVTGIRLHPHNKQHQRPKIHNMLKLYTFFLRTVF-----NQTFT 260
           P+DS +   +  R   + T +R   H+ Q +RP   N L+ +T+F ++V+     N+ F 
Sbjct: 376 PLDSTIQFVLNLRNAQQYTILR---HHDQFRRPNNCNDLRFHTWFQKSVYEQVYANKAFA 432

Query: 261 DCCALFYSHIGQT 299
           +   + + HIG+T
Sbjct: 433 EHKWISWRHIGET 445


>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
            1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 175  INSINAQRSIIC*NCTHFFLEPFLIKHLLTVAHYSI---PTSGKHYVMNPGK 321
            +  ++A RS+   +CT     P  I+HL ++ H  I   PT  +HY    GK
Sbjct: 1096 LRQLSALRSLYMQSCTGLRSLPSSIQHLTSLQHLVISYNPTLSRHYKNRVGK 1147


>11_01_0465 - 3601377-3601628,3602421-3602496,3603173-3603525
          Length = 226

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 67  KSLGLPLSTSRWIVTSAAPLLSAVGMRSPGF 159
           K LGLPL T +       PL+  VG R PG+
Sbjct: 33  KYLGLPLHTRKLRKVDLQPLVDKVGSRIPGW 63


>02_02_0650 +
           12644719-12645060,12645170-12645298,12646101-12646589,
           12646718-12646777
          Length = 339

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 58  GKPKSLGLPLSTSRWIVTSAAPLLSAVGMRSPG 156
           G PK+L  P  +S W+V +AAP     G  + G
Sbjct: 34  GLPKALPRPAISSLWMVGAAAPPRRFAGTAAVG 66


>03_02_0486 -
           8811539-8811610,8811725-8812231,8812327-8812551,
           8812648-8813064
          Length = 406

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 226 FFLEPFLIKHLLTVAHYSIPTSGKHYVMNPG 318
           F L+P   + +LT     IP +GK Y  N G
Sbjct: 258 FTLDPMYGEFVLTQEKVQIPKAGKIYAFNEG 288


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,065,250
Number of Sequences: 37544
Number of extensions: 172555
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)