Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b14
         (328 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X93093-1|CAA63646.1|  271|Homo sapiens LW blood group protein.         28   5.8  
L27671-1|AAA59538.1|  270|Homo sapiens Landsteiner-Wiener blood ...    28   5.8  
L27670-1|AAA59537.1|  236|Homo sapiens Landsteiner-Wiener blood ...    28   5.8  
DQ011692-1|AAY16986.1|  271|Homo sapiens intercellular adhesion ...    28   5.8  
BC029364-1|AAH29364.1|  271|Homo sapiens intercellular adhesion ...    28   5.8  
BC000244-1|AAH00244.1|  308|Homo sapiens spastic paraplegia 21, ...    28   5.8  
AK172849-1|BAD18813.1|  308|Homo sapiens protein ( Homo sapiens ...    28   5.8  
AF212231-1|AAK14917.1|  308|Homo sapiens GL010 protein.                28   5.8  

>X93093-1|CAA63646.1|  271|Homo sapiens LW blood group protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 77  PNDFGFP-ICHARLNFITMIIQN 12
           P DF  P ICHARLN   ++++N
Sbjct: 201 PRDFWQPVICHARLNLDGLVVRN 223


>L27671-1|AAA59538.1|  270|Homo sapiens Landsteiner-Wiener blood
           group glycoprotein protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 77  PNDFGFP-ICHARLNFITMIIQN 12
           P DF  P ICHARLN   ++++N
Sbjct: 200 PRDFWQPVICHARLNLDGLVVRN 222


>L27670-1|AAA59537.1|  236|Homo sapiens Landsteiner-Wiener blood
           group glycoprotein protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 77  PNDFGFP-ICHARLNFITMIIQN 12
           P DF  P ICHARLN   ++++N
Sbjct: 200 PRDFWQPVICHARLNLDGLVVRN 222


>DQ011692-1|AAY16986.1|  271|Homo sapiens intercellular adhesion
           molecule 4, Landsteiner-Wiener blood group protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 77  PNDFGFP-ICHARLNFITMIIQN 12
           P DF  P ICHARLN   ++++N
Sbjct: 201 PRDFWQPVICHARLNLDGLVVRN 223


>BC029364-1|AAH29364.1|  271|Homo sapiens intercellular adhesion
           molecule 4 (Landsteiner-Wiener blood group) protein.
          Length = 271

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 77  PNDFGFP-ICHARLNFITMIIQN 12
           P DF  P ICHARLN   ++++N
Sbjct: 201 PRDFWQPVICHARLNLDGLVVRN 223


>BC000244-1|AAH00244.1|  308|Homo sapiens spastic paraplegia 21,
           maspardin (autosomal recessive, Mast syndrome) protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 183 HQRPKIHNMLKLYTFFLRTVFNQTFT 260
           H+ P++H+++   +F   ++FNQT+T
Sbjct: 123 HKSPRVHSLILCNSFSDTSIFNQTWT 148


>AK172849-1|BAD18813.1|  308|Homo sapiens protein ( Homo sapiens
           cDNA FLJ24010 fis, clone KAT07969, highly similar to
           Homo sapiens acid cluster protein 33 (ACP33). ).
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 183 HQRPKIHNMLKLYTFFLRTVFNQTFT 260
           H+ P++H+++   +F   ++FNQT+T
Sbjct: 123 HKSPRVHSLILCNSFSDTSIFNQTWT 148


>AF212231-1|AAK14917.1|  308|Homo sapiens GL010 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 183 HQRPKIHNMLKLYTFFLRTVFNQTFT 260
           H+ P++H+++   +F   ++FNQT+T
Sbjct: 123 HKSPRVHSLILCNSFSDTSIFNQTWT 148


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,841,620
Number of Sequences: 237096
Number of extensions: 964827
Number of successful extensions: 1553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1553
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)