Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b14
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse e...    28   1.4  
AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death ab...    28   1.4  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical ...    27   3.2  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    26   5.6  
AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical ...    26   7.4  
AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical ...    25   9.7  
AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine r...    25   9.7  

>AF226866-1|AAF33845.1|  279|Caenorhabditis elegans cell-corpse
           engulfment proteinCED-2 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 FIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 63
           F+MR    PG+   T       +   H L++RG P + G
Sbjct: 38  FLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 76


>AC024776-8|AAK68463.1|  279|Caenorhabditis elegans Cell death
           abnormality protein 2 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 179 FIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 63
           F+MR    PG+   T       +   H L++RG P + G
Sbjct: 38  FLMRDSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDG 76


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
           protein F40F4.6 protein.
          Length = 2214

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 242 NGSKKKCVQF*HIMDLWALMLFIMRVQPNPGDLIPTALSNGAADVTIHRLVDRGSPNDFG 63
           N S +K   F H+   W   ++ + VQP+P D   ++  N A    +  +  R S N F 
Sbjct: 529 NDSAEKETVF-HLESYWRAPIYFIYVQPSPADGCNSSPDNSAYRDMVD-MAARSSGNTFY 586

Query: 62  F 60
           F
Sbjct: 587 F 587


>AF039710-9|AAB96685.2|  172|Caenorhabditis elegans Hypothetical
           protein C46E10.8 protein.
          Length = 172

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 70  SLGLPLSTSRWIVTSA---APLLSAVGMRSPGFGCTLIINSIN 189
           SLG P  +S    T     APLLSA+   SP  G T ++ S +
Sbjct: 99  SLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRVLASFS 141


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 232 RKNVYNFNILWIFGR*CCLL*GCNRIPVTSFRRRLVMARQT 110
           R N++ FN+ W+    C L+  C +  VT   RR    R T
Sbjct: 257 RSNIF-FNMKWLVNEICDLIGVCAKNTVTKPPRRTTTTRTT 296


>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +3

Query: 189 RPKIHNMLKLYTFFLRTVFNQTFTDCCALFYSHIGQTLC 305
           RP IHN     T+F  T+ ++ F     +F    G   C
Sbjct: 60  RPHIHNFNGSLTYFSHTILSEDFLYFWTIFIDIYGGMYC 98


>AL110478-1|CAB54340.2|  537|Caenorhabditis elegans Hypothetical
           protein Y26D4A.2 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 214 NCTHFFLEPFLIKHLLTVAHYSIPTSGKHYVMN 312
           N  H++L    +K       Y++ T+ K+YV+N
Sbjct: 268 NGKHYYLPYHRLKQAWNANFYNVKTTDKYYVVN 300


>AL021487-8|CAB76733.1|  320|Caenorhabditis elegans Hypothetical
           protein Y45F10B.14 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 213 KLYTFFLRTVFNQTFTDCCALFYSHIGQ 296
           K+   +   + N  FTDCC+ F +   Q
Sbjct: 35  KMVRVYTTLIINLAFTDCCSAFLNFFVQ 62


>AF078157-14|AAG24081.1|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein92 protein.
          Length = 348

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 222 TFFLRTVFNQTFTDCCALFYSHI 290
           T+ + T F   F  CC+L+Y +I
Sbjct: 218 TYMIITSFQIVFHGCCSLYYLYI 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,840,092
Number of Sequences: 27780
Number of extensions: 154156
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)