Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b13
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 1.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 2.5
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 2.5
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 3.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 26 4.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 4.4
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 26 4.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.4
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 5.8
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 5.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 5.8
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.8
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 7.6
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 7.6
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/42 (23%), Positives = 29/42 (69%)
Frame = -1
Query: 540 YDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNAL 415
+D ++ R ++ +++++ ++ K+GTE++ +G A+K++ L
Sbjct: 138 FDPKKIRY-MNVEQLELRPDLAKVGTEIRVVGNDAAEKLSIL 178
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 26.6 bits (56), Expect = 2.5
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 555 LRRRIYDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALKVAE 403
L +I + + RN+L ++M N+ L T+ ++ + +D+ LKV E
Sbjct: 468 LSEQIVELESKRNDLHSALLEMGGNLTSLLTKKDSIANKISDQSEHLKVLE 518
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 2.5
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = -1
Query: 288 EKLDCAKATYNA-LEAASIKITMDLNDKNQSLETDTRALEM---RAALVPKRPQGTDKNL 121
EKLD K + +E ++ K + + S E+ E+ R LVPK+ D+N
Sbjct: 634 EKLDVTKRAFGREIENSNEKELLTSTFLSPSAESQVCLAEIKTIRPGLVPKKQFSVDQNN 693
Query: 120 ILASMAD-EVPKVEN 79
+++ D +PK N
Sbjct: 694 VISDNTDCSLPKPSN 708
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.3
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = -1
Query: 330 QEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALEMRAALVP 151
+++ S R R+ E ++C N L + ITM + K+ S + R+ ++P
Sbjct: 467 KKIASARNAARR--EPINCILLDSNPLSLKGV-ITMSKHVKSWSYTIPKPFVNKRSKVLP 523
Query: 150 KRPQGTDKNLILAS 109
RP T NL +S
Sbjct: 524 LRPSVTHDNLSKSS 537
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.8 bits (54), Expect = 4.4
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -1
Query: 351 EADVGLK-QEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLN---DKNQSLETDT 184
E D+ K +EV SLRE +++ K T + E ++KI L +K + L+
Sbjct: 397 ERDISEKNEEVKSLREKAAKVKNDCTSEKKTRQSYEQQTVKIEEQLKFLLNKEKKLKKSI 456
Query: 183 RAL 175
AL
Sbjct: 457 EAL 459
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 4.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 321 HSLRETIRQLQEKLDCAKATYNALEAASIKITMDLND 211
H+ I L KLD + +N L A ++ TMD ND
Sbjct: 102 HAFGRVIAALA-KLDLPEGKWNELSAFLVQATMDQND 137
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 147 SWVLKQPSFPALEYQFPTIGFCR 215
SW K P AL Y FP++GF +
Sbjct: 297 SW--KSPLLNALHYPFPSVGFLK 317
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 4.4
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Frame = -1
Query: 540 YDTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKV---NALKVAETRLETRGYRPG 370
YD R + + K E++ EK+ ++ ++ A++ +L+ + RLE
Sbjct: 204 YDLSRQLLTVTEKLDKKEKDYEKIKEDVSSIKASLAEEQASNKSLRGEQERLEK------ 257
Query: 369 IELAADEADVGLKQEVHSLRETIRQLQEKLD-CA 271
+ +++++ L+Q +SLR + LQEKL+ CA
Sbjct: 258 LLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCA 291
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 5.8
Identities = 26/137 (18%), Positives = 56/137 (40%)
Frame = -1
Query: 531 QRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALKVAETRLETRGYRPGIELAAD 352
Q + NE+ Q ++ EKL ++K + E+ AL+ + + + R
Sbjct: 314 QNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKN--DEKNLR-------- 363
Query: 351 EADVGLKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDTRALE 172
E + + E+ R+ + + + + A E +++ L +K LE + E
Sbjct: 364 EMNANYETEMKEARQKLNNKEALISHYDDDFRAKELKISRLSESLREKAGLLEFQSSVSE 423
Query: 171 MRAALVPKRPQGTDKNL 121
R L ++ Q + K++
Sbjct: 424 QRDLLYQEQIQSSIKDM 440
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 534 TQRARNELDWQKMKMEENMEKLGTELKTMGEQFADK 427
T R E + K + E+N+ L +LKT + ADK
Sbjct: 548 TSRTLKEFETLKTQYEKNLCNLREQLKTARMKLADK 583
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 5.8
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Frame = -1
Query: 546 RIY-DTQRARNELDWQKMKMEENMEKLGTELKTMGEQFADKVNALK--VAETRLETRGYR 376
R+Y Q + + + M+ME+ + +L+ E+ ++ K ++++ E+ Y
Sbjct: 507 RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSSKESDDYE 566
Query: 375 PGIELAADEADVGLKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDK 208
+ EA+ +E+ +TIR+ +E + K L +++ NDK
Sbjct: 567 EVVGKLRTEAE----REIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERYNDK 618
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 25.4 bits (53), Expect = 5.8
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
Frame = -1
Query: 486 ENMEKLGTELKTMGEQFAD-KVNALKVAETRLE--TRGYRPGIELAADEADVGLKQEVHS 316
E+ME EL+ + +Q + ++ LK L T I A LK EVH
Sbjct: 82 EDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNEINKVGPSASFMLK-EVHD 140
Query: 315 LRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLE 193
+ + Q EK+ + + E++ I L N SL+
Sbjct: 141 SVQVLEQRLEKMGLIEKPSESSESSIYSILASLKHTNDSLQ 181
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 7.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -1
Query: 336 LKQEVHSLRETIRQLQEKLDCAKATYNALEAASIKITMDLNDKNQSLETDT 184
L ++ LRET+ + + + + N LEAAS +N++ Q+ D+
Sbjct: 572 LHTKIDELRETVSNFRADYNSIRTSLNQLEAAS-----GINERIQTTSADS 617
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.0 bits (52), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 270 KATYNALEAASIKITMDLNDKNQSLETDT 184
K T ++E+ S I++ N +NQ LET T
Sbjct: 21 KNTKTSIESVSNTISLSENGQNQDLETVT 49
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,103,910
Number of Sequences: 5004
Number of extensions: 40302
Number of successful extensions: 148
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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