Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b11
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    30   0.33 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    28   1.3  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.3  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   2.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   7.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.4  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.4  

>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 22/60 (36%), Positives = 28/60 (46%)
 Frame = +2

Query: 200 PSPVQGSRPRCPPAHMNDSWSWNSLPSRVLRSSRWQTWFSTTGTSIFFMMPRCLPSFPNL 379
           P+P+  S    PP+ M  S S    PS    S    T FST   S+   +P  LPS P+L
Sbjct: 271 PAPIPFSVSSDPPSTMGRSNSAVQSPSYFAHSLVNSTEFSTPNESL-SSLPSILPSIPSL 329


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
 Frame = +2

Query: 197 PPSPVQGSRPRCPPAHMNDSWSWNSLPSRVLRSSRWQ------TWFSTTGTSIFFMMPRC 358
           P  PV+ S  R  P   + + S  SLP   LR+ R         W  T G S     PR 
Sbjct: 154 PKKPVKNSSSRDQPVRNSGATSTASLPPAGLRAGRGSQISASLAWLKTGGASAAPSNPRQ 213

Query: 359 LPSFPNLS 382
            P   N S
Sbjct: 214 PPPTSNFS 221


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = +2

Query: 68  ARILLTSTYTPGVPCSPQPMPQDT--IPDCQYRFVWFGMGHTSGDPPSPVQGSRPRCPPA 241
           AR + T  +    P S +P+P  T  +P     F    +   S  PP+P    R   P  
Sbjct: 31  ARTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVK 90

Query: 242 HMNDSWSWNSL 274
           ++  S S+ S+
Sbjct: 91  NIEHSESFPSV 101


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 293 SSRWQTWFSTTGTSIFFMMPRCLPSFPNL 379
           SS +QTW+    T +FF +P CL SF  L
Sbjct: 148 SSFYQTWY----TLLFFYIPPCLLSFGGL 172


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 147  SGIVSWGIGCGEQGTPGVYVDVSK 76
            SG VSW IGC E     + VD  K
Sbjct: 1328 SGNVSWDIGCDENPANFMIVDSDK 1351


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/72 (20%), Positives = 35/72 (48%)
 Frame = -2

Query: 642 NESVPLTARVGDWDARNIDEVFTHQDRNVKSFIIHEQFNRRKFLYDAALLFLESPVDLTP 463
           N+ + L+ +       N+D+ FT +  ++ + + H+      F+ ++ +  LES   +T 
Sbjct: 552 NKILELSKKTAKSKVWNLDDFFTIEIPHMMAVVPHDDGINLSFMCESKVFDLESVDSVTC 611

Query: 462 NVGVACLPPPMD 427
           N  ++    PM+
Sbjct: 612 NYVLSSSKNPMN 623


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 486  ESPVDLTPNVGVACLPPPMDSPAAKT 409
            E+P    P+VGV  +PPP  +P   T
Sbjct: 1196 EAPPVPKPSVGVPPVPPPSTAPPVPT 1221


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 777  NTWMVVILRXEXRFPDDPESQKLYVYIGGG 688
            N  +  IL     FP++ E+ +L  ++GGG
Sbjct: 965  NNDLATILDNASLFPENDETDQLNTFVGGG 994


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,494
Number of Sequences: 5004
Number of extensions: 66645
Number of successful extensions: 203
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)