Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b11
(796 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0665 - 16774043-16774522 31 1.1
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 31 1.1
10_06_0054 - 10122703-10122983,10123549-10125376 30 2.4
03_01_0248 - 1932992-1933423,1933440-1933489,1933558-1933606,193... 30 2.4
09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280 29 3.2
03_02_0307 - 7293150-7293488,7293877-7294248,7294640-7294690,729... 29 3.2
02_05_0240 - 27110752-27111180 29 4.3
02_03_0197 - 16249988-16250509 29 5.6
01_07_0020 - 40518950-40519471 29 5.6
01_01_0864 + 6732553-6733602 29 5.6
10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704 28 7.4
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 28 7.4
09_02_0377 + 8144839-8145318 28 9.8
06_02_0316 - 14241729-14242049 28 9.8
04_04_1322 + 32640414-32642327 28 9.8
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995... 28 9.8
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 9.8
>05_03_0665 - 16774043-16774522
Length = 159
Score = 31.1 bits (67), Expect = 1.1
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 7/115 (6%)
Frame = +2
Query: 197 PPSPVQGSRPRCPPAHMNDSWSWNSLPSRVLRSSRWQTWFSTTGT---SIFFMMPRC-LP 364
PP P S P ++ S S +S + SS+ F+ G I+ P LP
Sbjct: 18 PPPPSSASFPHSNGYYLPSSSS-SSPTANGYFSSKGTGGFAANGDRRIEIYTTAPPPPLP 76
Query: 365 SFPNLSLPQPVARHLVLAAGESMGGGKQATPTLGVRSTGD---SRKSRAASYKNF 520
P L+LP P R G GGG + G+ D R+ R ASYK +
Sbjct: 77 PPPRLALPPPPGRRDGYLGGGGAGGGGGGGGSGGMWCFSDPEMKRRRRVASYKAY 131
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 486 ESPVDLTPNVGVACLPPPMDSPAAKTKCLATGWGKDKFGKEGRHRGI 346
+ P+D TPN+ + P D AAK LA ++ K G RG+
Sbjct: 1714 QKPIDATPNLPTSA---PKDKAAAKAAALAAARDLERSAKIGSRRGL 1757
>10_06_0054 - 10122703-10122983,10123549-10125376
Length = 702
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 452 TPTLGVRSTGDSRKSRAASYKNFLLLN-CSCMMKLLTFLSWWVNTSSM 592
+P++G ++TG ++ A N CS + KL LS W N SS+
Sbjct: 365 SPSVGGKTTGKEKQGMAVELIGMPQWNECSALAKLTVNLSEWSNASSV 412
>03_01_0248 -
1932992-1933423,1933440-1933489,1933558-1933606,
1933688-1933840
Length = 227
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 466 SQRGRRLLAAAHGLSRCQDQVPRHRLGQGQVREGRETPGHHE 341
S+RGR+L ++R DQ+ + + V+ RE PG E
Sbjct: 186 SERGRKLFTGRKNVARWYDQISKRETWKQVVKMQREHPGAFE 227
>09_02_0194 - 5641920-5642867,5642895-5642983,5643049-5643280
Length = 422
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 YTPGVPCSPQPMPQDTIPD----CQYRFVWFGMGHTSGDPPSPVQGSRPRCPPA 241
+ PG P ++ + D F +FG GH G PP P PR P A
Sbjct: 369 FPPGFEAEPDEPEEEELEDPFAGVPPDFDFFGYGHGYGYPPPPPPEDPPRAPLA 422
>03_02_0307 -
7293150-7293488,7293877-7294248,7294640-7294690,
7295293-7295365,7295931-7296166
Length = 356
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 548 KLLTFLSWWVNTSSMFLASQ-SPTLAVRG 631
KLLTFL +W+++ ++F+ S SP + G
Sbjct: 327 KLLTFLPYWLSSEAIFIVSSCSPQVCTEG 355
>02_05_0240 - 27110752-27111180
Length = 142
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 401 RHLVLAAGESMGGGKQATPTLGVRSTGDSRKSRAA 505
+H+V A G GGG V + G+ + RAA
Sbjct: 60 KHMVAALGSGTGGGGAVAAAAAVTAAGERHRQRAA 94
>02_03_0197 - 16249988-16250509
Length = 173
Score = 28.7 bits (61), Expect = 5.6
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 2/114 (1%)
Frame = -1
Query: 463 QRGRRLLA-AAHGLSRCQDQVPR-HRLGQGQVREGRETPGHHEKDRGAGCREPGLPARAP 290
+RGR A AA + + + R H +G+G G+ P E CR P R
Sbjct: 17 RRGREAAATAAIAMPGRESRSHRQHDVGEG----GQLLPPRREGSNRRRCRHAPTPGRGS 72
Query: 289 QDXXXXXXXXXXXXXXRGGAARPRPLHRGRGVAARVPHTEPNEPVLAVRDRVLG 128
+ GG+ + P RGR AA T P + R +G
Sbjct: 73 RSRLRLHIGEMRGSREGGGSGQLLPPRRGREAAATAAVTMPGRESRSHRQHNVG 126
>01_07_0020 - 40518950-40519471
Length = 173
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 428 SMGGGKQATPTLGVRSTGDSRKSRAASYK 514
S+GGG A+P G+ S G ++ AA Y+
Sbjct: 121 SIGGGGAASPICGLPSCGSKGRAAAAGYR 149
>01_01_0864 + 6732553-6733602
Length = 349
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 170 FGMGHTSGDPPSPVQGSRPRCPPAHMNDSWSWNSLP 277
+G H G PV G P P + W W SLP
Sbjct: 143 YGSQHAYGS--QPVYGRMPSKPSRAYREDWYWRSLP 176
>10_07_0017 - 11832733-11832963,11835172-11835550,11836466-11836704
Length = 282
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 403 PRHRLGQGQVREGRETPGHHEKDRGAGCRE 314
P +++G+G R+ R++ G H+ D G RE
Sbjct: 46 PGNKIGKGTRRQRRQSGGKHKIDDDGGARE 75
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -2
Query: 687 SLIHPSVVLTAGHMLNESVPLTARVGDWDARNIDEVFTHQDRNVKSFIIHEQFNRRKFLY 508
SL HP ++ + S + AR+ WD + F H ++ S ++ F+ +
Sbjct: 389 SLHHPDEIVALVCNFSSSSKIMARLNHWDVETLFHEFGHALHSLLSRTEYQHFSGTRVAL 448
Query: 507 DAA 499
D A
Sbjct: 449 DVA 451
>09_02_0377 + 8144839-8145318
Length = 159
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -1
Query: 184 VPHTEPNEPVLAV----RDRVLGHRLRGAGHPGRVRGRQQDP 71
VP + NE +AV R+R GH G G GR+R + DP
Sbjct: 65 VPLRQLNESAVAVMAEHREREHGHGGGGGGGGGRLRSHRADP 106
>06_02_0316 - 14241729-14242049
Length = 106
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -1
Query: 208 RGRGVAAR-VPHTEPNEPVLAVRDRVLGHRLRGAGHPGRVRG 86
RGRG + V E + V+ D LG R RGA H GR+RG
Sbjct: 46 RGRGWRRQDVDFMEVDHVVVLCGD--LGQRRRGAWHGGRLRG 85
>04_04_1322 + 32640414-32642327
Length = 637
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -1
Query: 460 RGRRLLAAAHGLSRCQDQVPRHRLGQGQVR 371
RGR L AAHG QVP +G +R
Sbjct: 500 RGRSGLCAAHGTLMASKQVPESEHSRGMIR 529
>01_06_0684 +
31196825-31197252,31199189-31199291,31199402-31199512,
31199614-31199697,31199915-31199986,31200073-31200129,
31200427-31200546,31201301-31201324,31201953-31202063,
31202165-31202202,31202287-31202443,31202700-31202801,
31202878-31202934,31203113-31203259,31203429-31203499,
31203582-31203669,31203810-31203866,31203996-31204193
Length = 674
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 103 GALLPAADAPGHDPGLPVPVRLVRYG 180
GA++P + PGH PVR +R+G
Sbjct: 10 GAIVPFSGEPGHAVAAAPPVRNIRHG 35
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Frame = +2
Query: 83 TSTYTPGVPCSPQPMPQDTIP----DCQYRFVWFGMGHT---SGDPPSPVQGSRPRCP 235
TS TPG CS P P D P D G G++ S PPSP + P P
Sbjct: 138 TSPSTPGGGCSSSPTPCDAPPSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTSPTTP 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,328,389
Number of Sequences: 37544
Number of extensions: 612184
Number of successful extensions: 2464
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2462
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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