Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b11
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 95 5e-20
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 71 1e-12
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 41 9e-04
AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like... 33 0.24
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 32 0.54
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 31 0.72
U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical pr... 30 2.2
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 29 5.1
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 29 5.1
U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5 prot... 28 6.7
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 8.9
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 95.1 bits (226), Expect = 5e-20
Identities = 69/216 (31%), Positives = 100/216 (46%), Gaps = 4/216 (1%)
Frame = -2
Query: 693 GGSLIHPSVVLTAGHMLNESVPLTARVGDWDARNIDEVFTHQDRNVKSFIIHEQFNRR-K 517
GGSLI P+ VLTA H + T+ H+ V + IH +N
Sbjct: 85 GGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGSPHR---VTAVSIHPWYNIGFP 141
Query: 516 FLYDAALLFLESPVDLTPNVGVACLPPPMDSPAAKTK-CLATGWGKDKFGKEGRHRGIMK 340
YD A++ + PV+ + CLP PA + + C+ TGWG G ++
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLP---SLPAVENRLCVVTGWGSTIEGSS-LSAPTLR 197
Query: 339 KIEVPVVENQVCQRELRKTRLGRLFQLHESFMCAGGQRGR-DPCTGDGGSPLVCPIPNQT 163
+I VP++ C +GR+ S +CAG G+ D C GD G PL+C
Sbjct: 198 EIHVPLLSTLFCSS--LPNYIGRIHL--PSMLCAGYSYGKIDSCQGDSGGPLMCA----R 249
Query: 162 NRYWQ-SGIVSWGIGCGEQGTPGVYVDVSKIRAWID 58
+ +W+ +G+VSWGIGC G PGVY +V WI+
Sbjct: 250 DGHWELTGVVSWGIGCARPGMPGVYGNVHSASTWIN 285
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 70.5 bits (165), Expect = 1e-12
Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Frame = -2
Query: 693 GGSLIHPSVVLTAGHMLNESVPLTAR---VGDWDARNID---EVFTHQDRNVKSFIIHEQ 532
G S++ + ++TA H E +++ VGDWD D ++F Q + + +++
Sbjct: 55 GASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQ--RIHFYPLYKD 112
Query: 531 FNRRKFLYDAALLFLESP-VDLTPNVGVACLPPPMDSPAAKTKCLATGWGKDKFGKEGRH 355
F +D A+L + P ++ CLP +C+ +GWG R+
Sbjct: 113 I----FSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWGSMGL----RY 164
Query: 354 RGIMKKIEVPVVENQVCQRELRKTRLGRLFQLHESFMCAGG-QRGRDPCTGDGGSPLVCP 178
++ +P++ C + +++ + S CAG + G D C GD G P C
Sbjct: 165 AERLQAALIPIINRFDC---VNSSQI--YSSMSRSAFCAGYLEGGIDSCQGDSGGPFACR 219
Query: 177 IPNQTNRYWQSGIVSWGIGCGEQGTPGVYVDVSKIRAWI 61
+ + +G++SWG GC ++ PG+Y V+ +WI
Sbjct: 220 --REDGAFVLAGVISWGDGCAQKKQPGIYTMVAPYLSWI 256
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 41.1 bits (92), Expect = 9e-04
Identities = 52/180 (28%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Frame = -2
Query: 561 NVKSFIIHEQFNRRKFLYDAALLFLESPVDLTPNVGVACLPPPMDSPAAKT--KCLATGW 388
+VK IH +N + D ALL + S + + CL DS K + G+
Sbjct: 106 SVKEAYIHSGYNNQTADNDIALLRISSDLSKL-GIKPVCLVHD-DSKLLKQYKNGVVIGY 163
Query: 387 G----KDKFGKEGR-HRGIMKKIEVPVVENQVCQRELRKTRLGRLFQLHESFMCAGGQ-R 226
G +D G+ + ++ VP++ + C + R L + ++ +CAG
Sbjct: 164 GLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSV-KITGYQICAGAYLH 222
Query: 225 GRDPCTGDGGSPLVCPIPNQTNRYWQSGIVSWGI----GCGEQGT-PGVYVDVSKIRAWI 61
G P GD G PL+ I Y Q GI S+G G +QG PGVY +SK WI
Sbjct: 223 GTAP--GDSGGPLL--IHKSNGEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWI 278
>AF003384-12|AAB54236.2| 331|Caenorhabditis elegans Trypsin-like
protease protein 5 protein.
Length = 331
Score = 33.1 bits (72), Expect = 0.24
Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 1/131 (0%)
Frame = -2
Query: 507 DAALLFLESPVDLTPNVGVACLP-PPMDSPAAKTKCLATGWGKDKFGKEGRHRGIMKKIE 331
D +L LES +D ACLP P + + + GWG D GK G I+
Sbjct: 177 DIVILELESTIDDVEGANYACLPFLPEVNIQSGANVTSFGWGSDP-GK-GFDNAAFPMIQ 234
Query: 330 VPVVENQVCQRELRKTRLGRLFQLHESFMCAGGQRGRDPCTGDGGSPLVCPIPNQTNRYW 151
V + + F +SF C + ++ C+GD G L + + R +
Sbjct: 235 VLTLATETLATCEENWGTSIPF---DSF-CTAEEEDKNVCSGDSGGGLTFH-QSDSAREF 289
Query: 150 QSGIVSWGIGC 118
IVS+G C
Sbjct: 290 IIAIVSYGSDC 300
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 31.9 bits (69), Expect = 0.54
Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 23/210 (10%)
Frame = -2
Query: 741 RFPDDPESQKLYVYIGGGSLIHPSVVLTAGHML--NESVPLTARVGDWDARNIDEVFTHQ 568
RFPD + + GG LI PS+V+T+ H + + +TA+V D
Sbjct: 37 RFPDGTTN------VCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVH-----LNKH 85
Query: 567 DRNVKSFIIHEQFNRRKFLYDA-------ALLFLESPVDL--TP-NVGVACLPP------ 436
D + F H +KF DA A++FL D+ +P ++ +A LP
Sbjct: 86 DDGEQEFRSHAMAISKKFFNDASEANDDVAVIFLPQRADVCHSPLSLQIAKLPSTGSVNF 145
Query: 435 ----PMDSPAAKTK-CLATGWGKDKFGKEGRHRGIMKKIEVPVVENQVCQRELRKTRLGR 271
P+ +T C GWGK + K ++ ++++ V L R+G+
Sbjct: 146 KETAPLTQLQLETSVCYVAGWGKTE-NKTAKYSDSVRQMMV----------NLSVRRIGK 194
Query: 270 LFQLHESFMCAGGQRGRDPCTGDGGSPLVC 181
L + G R C GD GSP+ C
Sbjct: 195 RKYLIAKAV-TGSSRA---CMGDSGSPVYC 220
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +2
Query: 245 MNDSWSWNSLPSRVLRSSRWQTWFSTTGTSIFFMMPRCLPSFPNLSLPQ 391
+ND+W W S+P+ R G ++F + P C S PN+ Q
Sbjct: 356 LNDTWRWKSIPTIGRWWGRKFLQMEVRGEAVFRLNPEC--SMPNIEFHQ 402
>U28735-5|AAF99955.3| 279|Caenorhabditis elegans Hypothetical
protein F48E3.4 protein.
Length = 279
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 213 CTGDGGSPLVCPIPNQTNRYWQSGIVS 133
C D G+PL C + + N+Y Q GIVS
Sbjct: 197 CWDDIGAPLECVLDVENNKYVQVGIVS 223
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +2
Query: 245 MNDSWSWNSLPSRVLRSSRWQTWFSTTGTSIFFMMP-----RCLPS 367
++ +W+W S ++W T F T T + F P RC PS
Sbjct: 500 ISTNWTWKGTGSEAWYWTQWHTDFGTISTILAFSQPLNSLLRCPPS 545
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/52 (34%), Positives = 20/52 (38%)
Frame = +2
Query: 83 TSTYTPGVPCSPQPMPQDTIPDCQYRFVWFGMGHTSGDPPSPVQGSRPRCPP 238
T YTPG P P P P YR V H PP+ +P C P
Sbjct: 163 TVRYTPG-PTPPGPWTYTAPPYYTYRTVPPASNHYETVPPAVQTTPQPPCTP 213
>U39848-2|AAT81211.1| 279|Caenorhabditis elegans Hypothetical
protein B0286.6 protein.
Length = 279
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 522 RKFLYDAALLFLESPVDLTPNVGVACLPPPMDSPAAK-TKCLATGWGKD 379
R+ D A+ LE P++ + ++ ACLP P + T G+G+D
Sbjct: 117 RESFNDIAVFELEEPIEFSKDIFPACLPSAPKIPRIRETGYKLFGYGRD 165
>AL032622-4|CAA21499.1| 738|Caenorhabditis elegans Y66A7A.5
protein.
Length = 738
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 543 IHEQFNRRKFLYDAALLFLESPVDLTPNVGV 451
+HE FN RKF+ ++LF + +P + +
Sbjct: 509 VHEWFNNRKFVDSVSILFSGKYLGFSPKIAI 539
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 83 TSTYTPGVPCSPQPMPQDTIPDCQYRFVWFGMGHTSGDPPSPVQGSRPRCPP 238
T YTPG P P P P YR + H PP+ +P C P
Sbjct: 240 TVRYTPG-PTPPAPWTYTVPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTP 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,696,888
Number of Sequences: 27780
Number of extensions: 417112
Number of successful extensions: 1429
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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