Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b11
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    60   2e-11
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   7.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   10.0 

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 60.1 bits (139), Expect = 2e-11
 Identities = 60/204 (29%), Positives = 88/204 (43%), Gaps = 8/204 (3%)
 Frame = -2

Query: 699 IGGGSLIHPSVVLTAGHML--NESVPLTARVGDWDARNIDEVFTHQDRNVKSFIIHEQFN 526
           I G ++I    VLTA H +    +  L   VG+ D  +  E       ++   IIH +++
Sbjct: 187 ICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPKYD 246

Query: 525 RRKF----LYDAALLFLESPVDLTPNVGVACLPPP--MDSPAAKTKCLATGWGKDKFGKE 364
             +     + D ALL  E  +     VG ACLP    +DS A  +     GWG   F   
Sbjct: 247 IIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAG-SDVTVLGWGHTSFN-- 303

Query: 363 GRHRGIMKKIEVPVVENQVCQRELRKTRLGRLFQLHESFMCAGGQRGRDPCTGDGGSPLV 184
               G++  I      N + Q E  K   G +     + MCA   +G+D C  D G P++
Sbjct: 304 ----GMLSHILQKTTLNMLTQVECYKY-YGNIMV---NAMCAYA-KGKDACQMDSGGPVL 354

Query: 183 CPIPNQTNRYWQSGIVSWGIGCGE 112
              P +T R    GI+SWG  CG+
Sbjct: 355 WQNP-RTKRLVNIGIISWGAECGK 377


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 191 GDPPSPVQGSRPRCPP 238
           G PP+P QG  P  PP
Sbjct: 37  GSPPNPSQGPPPGGPP 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 41  FSATFSSIHARILLTSTYTPGVPCSPQPMPQDTIPD 148
           F A        I+L  + TP  P  P P P  + PD
Sbjct: 319 FMALMEYCLVNIVLGDSDTPPKPAPPPPPPSSSGPD 354


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 105 TPGVYVDVSKIRAWIDEKVAENGFDTKAYQ 16
           TP V V      +++DEK+  N  D + Y+
Sbjct: 285 TPSVVVSDYSDYSYLDEKLERNDLDLEKYE 314


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 444 LPPPMDSPAAKTKCLATGWGKDK 376
           LP PMD P A  + +   W K++
Sbjct: 857 LPAPMDCPEAIYQLMLDCWQKER 879


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 453 VACLPPPMDSPAAK 412
           VAC PPP  +P ++
Sbjct: 390 VACSPPPRQTPPSR 403


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 400 RHRLGQGQVREGRETPGHH 344
           R R G+G+ RE R  P H+
Sbjct: 316 RDRRGRGRSREHRIIPSHY 334


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -2

Query: 189 LVCPIPNQTNRYWQSGIVSWGIG 121
           L+  +P + + +WQ     WG+G
Sbjct: 83  LILGLPFELSVFWQQYPWQWGLG 105


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 375 TCPCPSRWRGTWS 413
           TCP    WRG +S
Sbjct: 245 TCPIKVSWRGNYS 257


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 375 TCPCPSRWRGTWS 413
           TCP    WRG +S
Sbjct: 296 TCPIKVSWRGNYS 308


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 375 TCPCPSRWRGTWS 413
           TCP    WRG +S
Sbjct: 245 TCPIKVSWRGNYS 257


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 5/18 (27%), Positives = 16/18 (88%)
 Frame = +2

Query: 539 CMMKLLTFLSWWVNTSSM 592
           CM+ +++++S+W++ S++
Sbjct: 253 CMLVIVSWVSFWLDQSAV 270


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 5/18 (27%), Positives = 16/18 (88%)
 Frame = +2

Query: 539 CMMKLLTFLSWWVNTSSM 592
           CM+ +++++S+W++ S++
Sbjct: 253 CMLVIVSWVSFWLDQSAV 270


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 210 TGDGGSPLVCPIPN 169
           T  GGSP + P PN
Sbjct: 101 TNRGGSPKLTPYPN 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,191
Number of Sequences: 438
Number of extensions: 5342
Number of successful extensions: 25
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)