Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b10
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 324 1e-89
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 315 4e-87
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 173 2e-44
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 115 9e-27
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 31 0.20
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 27 3.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 27 4.2
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.6
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 26 5.6
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 26 7.4
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 9.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 9.8
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 324 bits (795), Expect = 1e-89
Identities = 141/247 (57%), Positives = 189/247 (76%)
Frame = -2
Query: 800 LLPHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIRFKGSL 621
L HA ++ D F+ DNEA YDI R+L++ RPTY NLNRLIAQVVS +TAS+RF GSL
Sbjct: 193 LTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSL 252
Query: 620 NVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFEPANQMVKCDPR 441
NVDL EF+TNL+P+PRIHFPLVT++P VS ++A HE+ + ++ CFEP NQMVKCDPR
Sbjct: 253 NVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 312
Query: 440 KGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIGLNYQPPTTVPGGDL 261
G+Y++ CLL+RGDV P D+ A + +K+ R+I+FV W PTGFKIG+ Y+PP VPG +
Sbjct: 313 TGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGI 372
Query: 260 AAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHYIGEGLEEGEFSNALQNIKAL 81
A + RA M+SN+++I AW R+ KF +M++KRAFVH Y+GEG+EEGEFS A +++ AL
Sbjct: 373 AKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 432
Query: 80 SNDYKEI 60
DY+E+
Sbjct: 433 ERDYEEV 439
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 315 bits (774), Expect = 4e-87
Identities = 137/247 (55%), Positives = 188/247 (76%)
Frame = -2
Query: 800 LLPHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIRFKGSL 621
L HA ++ D F+ DNE+ YDI R+L++ RP+Y NLNRLIAQVVS +TAS+RF+GSL
Sbjct: 189 LTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEGSL 248
Query: 620 NVDLVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFEPANQMVKCDPR 441
NVDL EF+TNL+P+PRIHFPLVT+AP VS ++A HE+ + ++ CFEP NQMVKCDPR
Sbjct: 249 NVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPR 308
Query: 440 KGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIGLNYQPPTTVPGGDL 261
G+Y++ CLL+RGDV P D+ A + +K R+I+FV W PTGFKIG+ +PP + G ++
Sbjct: 309 AGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEI 368
Query: 260 AAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHYIGEGLEEGEFSNALQNIKAL 81
A + RA M+SN+++I AW R+ KF +M++KRAFVH Y+GEG+EEGEFS A +++ AL
Sbjct: 369 AKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAAL 428
Query: 80 SNDYKEI 60
DY+E+
Sbjct: 429 ERDYEEV 435
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 173 bits (422), Expect = 2e-44
Identities = 86/245 (35%), Positives = 140/245 (57%)
Frame = -2
Query: 791 HACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIRFKGSLNVD 612
H + D F DNEAL I A +L++ P+Y +LN L++ V++ +T S RF G LN D
Sbjct: 190 HQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSD 249
Query: 611 LVEFKTNLIPFPRIHFPLVTFAPFVSPSRACHETMTTNQLMMSCFEPANQMVKCDPRKGQ 432
L + N++PFPR+HF +V FAP + + + ++ +L F+ N MV DPR G+
Sbjct: 250 LRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGR 309
Query: 431 YISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIGLNYQPPTTVPGGDLAAM 252
Y++ LFRG V+ +++ I V+ S FV W P + +VP DL
Sbjct: 310 YLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNV-----LKAVCSVPPKDL--- 361
Query: 251 QRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHYIGEGLEEGEFSNALQNIKALSND 72
+ +A + NS++I+ + R+ +FS MF ++AF+H Y GEG++E EF+ A N+ L ++
Sbjct: 362 KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 421
Query: 71 YKEIE 57
Y++ +
Sbjct: 422 YQQYQ 426
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 115 bits (276), Expect = 9e-27
Identities = 72/255 (28%), Positives = 128/255 (50%), Gaps = 8/255 (3%)
Frame = -2
Query: 797 LPHACMNTEDVCFLFDNEALYDILARSLEVPRPTYTNLNRLIAQVVSCMTASIRFKGSLN 618
L +N + V L DN AL I A L PT+ N+L++ V+S T ++R+ G +N
Sbjct: 192 LKRLTLNADSVVVL-DNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMN 250
Query: 617 VDLVEFKTNLIPFPRIHFPLVTFAPF----VSPSRACHETMTTNQLMMSCFEPANQMVKC 450
DLV +LIP PR HF L ++ PF V ++A +T T +M P NQMV
Sbjct: 251 NDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKT-TVLDVMRRLLLPKNQMVSV 309
Query: 449 DP-RKGQYISCCLLFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIGLNYQPPTTVP 273
+P +K +IS + +G+ +P D++ ++ ++ R F+ W P ++ L+ + P
Sbjct: 310 NPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKT 369
Query: 272 GGDLAAMQRAAVMVSNSSAIRVAWERICKKFSVMFAKRAFVHHYIGEGLEE---GEFSNA 102
++ + M++N ++I ++R ++ + + AF+ Y E + E EF ++
Sbjct: 370 NHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSS 424
Query: 101 LQNIKALSNDYKEIE 57
+ L N+Y+ E
Sbjct: 425 RDVVADLINEYEACE 439
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 666 GCFLHDCFDKIQRFSERRSRRI*NKLNSISTDTFSISNICAIC 538
G F HD ++KI +++ N+L SI T+TF +I C
Sbjct: 27 GGFKHDLYEKIIAIEIEVEKKLLNRLKSIQTNTFERPDIIWSC 69
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 27.1 bits (57), Expect = 3.2
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 205 LGKEFAKNFL*CLPNALL-YTIILAKALKRVNSQMRCKILKLCPMTI 68
+G F+KNFL CL N L L +A KRV S++ K+ K P +
Sbjct: 312 IGDIFSKNFLHCLINHLSDEDRYLYRAAKRVTSKLE-KVSKQNPTLV 357
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 163 LANITENFLQILSQATRIAELFETITAALCIAARSPPGTVV 285
LANI+ +S A+ ++F+TI I A +P G VV
Sbjct: 373 LANISPKMQSFVSCASAAKKIFDTIDRVSPINAFTPTGDVV 413
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 413 LFRGDVNPNDINATINHVKNSRSIKFVSWSPTGFKIG 303
L GD+N N+ + I F+ WSPTG +IG
Sbjct: 346 LVSGDMNAAAGNSITFAEAIPQDIGFLPWSPTGGQIG 382
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 725 ARSLEVPRPTYTNLNRLIAQVVSCMTASIRFK-GSLNVDLVEFKTNLIP 582
A+ E+ + + N N + VV S+RF+ G L E K ++P
Sbjct: 526 AKEREITKEKFRNFNEQVTSVVQVHRESVRFETGVATFLLQEVKKTVLP 574
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +1
Query: 565 KCIRGNGIKFVLNSTRSTFREPLNLIEAVMQETTWAISLFKFV*VGLGTSNDLARISYNA 744
K I+ G+K V TR R P N++ + + + S ++ +G T D+A +
Sbjct: 29 KLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKSSNNAYIVLGKVTVEDMAAQARAF 88
Query: 745 SLSKRKHTSS 774
+ S+++ T +
Sbjct: 89 NESQKQATET 98
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -2
Query: 731 ILARSLEVPRPTYTNLNRLIAQVVSCMTASIRFKGSLNVDLVEFKT 594
+L +SLE+ +TN LI +++ C+ A++ + S +V F+T
Sbjct: 344 VLQKSLEIYPERFTN--NLIEELIECLPATLMQRHSCHVWQKFFET 387
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 9.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 171 HHRKFFANSFPSNTYCGTV 227
HH +F NSF S+TY V
Sbjct: 744 HHLNYFMNSFLSSTYFDAV 762
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,288,490
Number of Sequences: 5004
Number of extensions: 69991
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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