Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b08
(860 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-9|AAB53824.1| 208|Caenorhabditis elegans Hypothetical pr... 177 1e-44
AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical ... 44 2e-04
AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical ... 44 2e-04
U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical pr... 33 0.26
U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical pr... 33 0.26
DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein. 33 0.26
DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein. 33 0.26
AL132865-5|CAB60597.1| 258|Caenorhabditis elegans Hypothetical ... 32 0.60
AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical ... 32 0.60
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 31 1.1
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 31 1.1
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 29 5.6
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 29 5.6
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 9.8
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 9.8
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 9.8
>U00048-9|AAB53824.1| 208|Caenorhabditis elegans Hypothetical
protein C05D11.3 protein.
Length = 208
Score = 177 bits (430), Expect = 1e-44
Identities = 86/171 (50%), Positives = 119/171 (69%)
Frame = -2
Query: 814 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEWLAIGHGEYT 635
+QLL+ AQ VE QID E+ +L+ LE DLE IR+QR+ +MK K + E L+ GHG+Y
Sbjct: 11 EQLLR-AAQVVEEQIDQEMNKLENLEEDDLEVIRRQRMEQMKKAQKDRIEMLSHGHGKYE 69
Query: 634 EIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFL 455
E+ EKEFF KS VVC FY + RCKIVD H +ILA+KH+ TRF+ ++ E+ FL
Sbjct: 70 EVADEKEFFEATKKSDKVVCLFYLPGNFRCKIVDKHFEILARKHVGTRFIHVNAEKVHFL 129
Query: 454 TGRLKIRVIPTLGLVKDNKTKDFIVGFTDLGNRDDFSTDILEWRIARSEAI 302
T RL IRVIP++ +V +T D+I GF +LG +D+F+T+ +E R+ARSE +
Sbjct: 130 TTRLNIRVIPSIAIVVKQQTVDYIRGFDELGGKDEFTTETMENRLARSEVL 180
>AF125951-5|AAL27238.1| 345|Caenorhabditis elegans Hypothetical
protein D2063.3a protein.
Length = 345
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -2
Query: 634 EIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLK-ILAKKHIETRFVKLDVERAPF 458
EI +E A + V HFY S +P C+ V+ L +LA+ + R +D E P
Sbjct: 5 EIKSGEEVAAFIKEPSPAVLHFYASWAPSCEQVNQLLDDLLAEIALPLRAAFIDAEALPG 64
Query: 457 LTGRLKIRVIPTLGLVKDNKTKDFIVGF 374
++ KI PTL + K D I GF
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDGF 92
>AF125951-4|AAT68898.1| 342|Caenorhabditis elegans Hypothetical
protein D2063.3b protein.
Length = 342
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = -2
Query: 634 EIDGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLK-ILAKKHIETRFVKLDVERAPF 458
EI +E A + V HFY S +P C+ V+ L +LA+ + R +D E P
Sbjct: 5 EIKSGEEVAAFIKEPSPAVLHFYASWAPSCEQVNQLLDDLLAEIALPLRAAFIDAEALPG 64
Query: 457 LTGRLKIRVIPTLGLVKDNKTKDFIVGF 374
++ KI PTL + K D I GF
Sbjct: 65 ISLNFKITAAPTLVFFSNGKEVDRIDGF 92
>U23168-7|AAC38808.1| 115|Caenorhabditis elegans Hypothetical
protein B0228.5a protein.
Length = 115
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -2
Query: 583 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 404
++ FY + CK + K LA H F K+DV+ A L + ++++PT K+
Sbjct: 30 IILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKN 89
Query: 403 NKTKDFIVG 377
+ + G
Sbjct: 90 GDAIEALEG 98
>U23168-6|AAP86623.1| 114|Caenorhabditis elegans Hypothetical
protein B0228.5b protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -2
Query: 583 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 404
++ FY + CK + K LA H F K+DV+ A L + ++++PT K+
Sbjct: 29 IILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKN 88
Query: 403 NKTKDFIVG 377
+ + G
Sbjct: 89 GDAIEALEG 97
>DQ241300-1|ABB45864.1| 114|Caenorhabditis elegans TRX-1b protein.
Length = 114
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -2
Query: 583 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 404
++ FY + CK + K LA H F K+DV+ A L + ++++PT K+
Sbjct: 29 IILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKN 88
Query: 403 NKTKDFIVG 377
+ + G
Sbjct: 89 GDAIEALEG 97
>DQ241299-1|ABB45863.1| 115|Caenorhabditis elegans TRX-1a protein.
Length = 115
Score = 33.1 bits (72), Expect = 0.26
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = -2
Query: 583 VVCHFYKSDSPRCKIVDMHLKILAKKHIETRFVKLDVERAPFLTGRLKIRVIPTLGLVKD 404
++ FY + CK + K LA H F K+DV+ A L + ++++PT K+
Sbjct: 30 IILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKN 89
Query: 403 NKTKDFIVG 377
+ + G
Sbjct: 90 GDAIEALEG 98
>AL132865-5|CAB60597.1| 258|Caenorhabditis elegans Hypothetical
protein Y62E10A.8 protein.
Length = 258
Score = 31.9 bits (69), Expect = 0.60
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = -2
Query: 688 LRAKQKQEWLAIGHGEYTEIDGEKEFF-AVCNKSQNVVCHF-YKSDSPRCKIVDMHLKIL 515
L+AK+ +E I E+ +K++ AV S ++C Y+ +S C+ + +KIL
Sbjct: 112 LKAKRLREMRKIAANRVIEMTDKKQYSDAVDGSSSYLLCVLIYEPESDECEYLTRIVKIL 171
Query: 514 AKKHIETRFVK 482
A +T+FV+
Sbjct: 172 AADCPKTKFVR 182
>AF106589-2|AAC78230.1| 107|Caenorhabditis elegans Hypothetical
protein Y44E3A.3 protein.
Length = 107
Score = 31.9 bits (69), Expect = 0.60
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -2
Query: 628 DGEKEFFAVCNKSQNVVCHFYKSDSPRCKIVDMHLKILAKKHIET-RFVKLDVERAPFLT 452
D K FA K+Q V+ F S C+++ ++ LA +H + +K+DV+ +
Sbjct: 9 DEFKTIFAE-KKTQPVILFFTASWCGPCQMIKPRVEELAAEHKDRLSILKIDVDECDGVG 67
Query: 451 GRLKIRVIPTLGLVKDNKTKDFIVG 377
+I +PT L+ D KD G
Sbjct: 68 EEYEINSMPTFLLIVDGIKKDQFSG 92
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 460 TALSPRPTSRTASRCASWPRS*GACPRSCSGASPTCRN-GTRHSDFYC 600
T +P T+ + S+CASW AC C G R GT YC
Sbjct: 517 TTQAPPTTTTSTSQCASW----SACSAQCGGCGTQSRRCGTYVETVYC 560
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +1
Query: 460 TALSPRPTSRTASRCASWPRS*GACPRSCSGASPTCRN-GTRHSDFYC 600
T +P T+ + S+CASW AC C G R GT YC
Sbjct: 517 TTQAPPTTTTSTSQCASW----SACSAQCGGCGTQSRRCGTYVETVYC 560
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -2
Query: 835 LITMANVDQLLQHVAQNVERQIDSEIERLDALESGD--LEAIRQQRIAEMKLRAKQKQEW 662
++++ + QH + ++ +ID ++E + +E G+ LE +R E +R + +
Sbjct: 605 ILSIERMSDRTQHTVKEMDFEIDEKMELVAGVEDGNQVLEKLRNMSETEKLMRFNKLETA 664
Query: 661 LAIGHGEYTE 632
+ +G+Y E
Sbjct: 665 ADLLNGKYEE 674
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 634 LCILRDQWPTTLVSALLLISFQLCVVV*SPLDP 732
L IL+DQW +L +L+S Q + P DP
Sbjct: 93 LDILKDQWAASLTLRTVLLSIQALMCTPEPKDP 125
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 814 DQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQEW 662
D L+++A+ + Q D E R A E ++A+R R+A ++ +K EW
Sbjct: 41 DIALRNIAKFFKEQSDEE--RGHATELMRIQAVRGGRVAMQNIQKPEKDEW 89
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 454 SETALSPRPTSRTASRCASWPRS*GACPRSCSGASPTCRN 573
SE A SP P S T AS+P + G+ P +P RN
Sbjct: 852 SEYATSPTPPSPTRVVTASFPPNEGSSPGILPSTNPPPRN 891
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = -2
Query: 823 ANVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQE 665
A V+++ + ++ R++D+E+ER +A+ SG E I++ + + + K+K+E
Sbjct: 827 ARVEEIPEKATKSF-RELDNELERCEAVHSG--EKIKKVKEPKPPKQPKEKKE 876
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/53 (28%), Positives = 34/53 (64%)
Frame = -2
Query: 823 ANVDQLLQHVAQNVERQIDSEIERLDALESGDLEAIRQQRIAEMKLRAKQKQE 665
A V+++ + ++ R++D+E+ER +A+ SG E I++ + + + K+K+E
Sbjct: 840 ARVEEIPEKATKSF-RELDNELERCEAVHSG--EKIKKVKEPKPPKQPKEKKE 889
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,592,097
Number of Sequences: 27780
Number of extensions: 414438
Number of successful extensions: 1212
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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