Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b07
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.85 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.85 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    29   1.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    28   2.0  
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    27   2.6  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   3.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    27   4.5  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    27   4.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   7.9  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -3

Query: 701  SPKSIIIGTRRKEVFGRCKKF*FQKAKTSRQRPKSRNWYAPC 576
            SP+ +II T  +    +C+ F         + P S  +YA C
Sbjct: 1960 SPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSHTYYASC 2001


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -1

Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVE----NP 182
           ++N    + K F + Q  E +KD   +   FHVF ++    LAY       S+     N 
Sbjct: 292 RSNHSGIESKTFKKYQVIEALKDPVTWLFTFHVFCNQLSNNLAYQQNLLFTSLNVSDLNS 351

Query: 181 RVLGVVGMGH--VDGIIKYY 128
            ++GV   G+  V  II  Y
Sbjct: 352 TLVGVASAGYNCVSAIIATY 371


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 406 RHLATEKLVLLLFESVDLRDTIYIQEFFA 492
           R LAT  L+ L +   DLRD + IQE  A
Sbjct: 560 RRLATSTLIRLFYYYYDLRDAVPIQETLA 588


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 857 IVKRFYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKS 690
           I K F     ++ P + Q    + +++  PR F  + C  V   L   +  + PKS
Sbjct: 548 IAKVFQEYSTIINPEVQQRACEYLQLLKMPRDFLQLVCDEVPPFLDGNRDGVHPKS 603


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 607 GQNLVTGMLHAMLLKTYADIAKELGVAPG 521
           GQ  + GMLHA L  +YA+ + +    PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 191 GKSTRTRSSWHGSCGRNYQVLWKDE 117
           G     + SWH    RN + +WKDE
Sbjct: 3   GGDLNMKKSWHPLLMRNQEKVWKDE 27


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 747  LYPKERPWLVYHFAKV*QILVNAGIHHFSFVIKP 848
            LYP+E+   V+HF K   I    GI  FSFVIKP
Sbjct: 998  LYPEEKIVQVHHFHK--DIARIHGI-PFSFVIKP 1028


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 367 NPKPLDKNNLEKYKDKEFVQSQF 299
           NPK L K     +KDKE+  S +
Sbjct: 648 NPKELSKKKTTDFKDKEYYMSHY 670


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 203 CSFSGKSTRTRSSWHGSCGRNYQVLWKDEARRHCS 99
           C+ S K ++ +  W   CGR    L K   +  CS
Sbjct: 126 CTSSLKQSKQKRLWKEHCGRERAFLRKKRTKIQCS 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,634,526
Number of Sequences: 5004
Number of extensions: 77537
Number of successful extensions: 260
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)