Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b07
(862 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein. 134 3e-31
BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein. 134 3e-31
AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein pr... 134 3e-31
AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA seq... 134 3e-31
AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA seq... 134 3e-31
AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA seq... 134 3e-31
BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein. 125 2e-28
AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein. 36 0.14
BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-l... 33 1.0
AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-l... 33 1.0
AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent ... 33 1.0
>DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein.
Length = 376
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 106 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 165
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 166 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 224
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 225 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 281
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 282 AEPRKCVPSVVVGVVGMGHVPGIEK 306
>BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein.
Length = 330
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 60 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 119
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 120 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 178
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 179 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 235
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 236 AEPRKCVPSVVVGVVGMGHVPGIEK 260
>AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein
protein.
Length = 376
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 106 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 165
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 166 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 224
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 225 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 281
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 282 AEPRKCVPSVVVGVVGMGHVPGIEK 306
>AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 304
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 34 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 93
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 94 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 152
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 153 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 209
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 210 AEPRKCVPSVVVGVVGMGHVPGIEK 234
>AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 309
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 39 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 98
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 99 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 157
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 158 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 214
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 215 AEPRKCVPSVVVGVVGMGHVPGIEK 239
>AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 376
Score = 134 bits (325), Expect = 3e-31
Identities = 76/205 (37%), Positives = 117/205 (57%), Gaps = 13/205 (6%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 106 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 165
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 166 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 224
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR--- 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 225 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASD 281
Query: 178 ----------VLGVVGMGHVDGIIK 134
V+GVVGMGHV GI K
Sbjct: 282 AEPRKCVPSVVVGVVGMGHVPGIEK 306
>BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein.
Length = 292
Score = 125 bits (301), Expect = 2e-28
Identities = 64/177 (36%), Positives = 104/177 (58%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC+ RVS +A+ +KL+QAV+ L++G++ +LLK A I ++LG+
Sbjct: 106 ELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGM 165
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+
Sbjct: 166 APGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPIS 224
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 225 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPR 278
>AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein.
Length = 145
Score = 36.3 bits (80), Expect = 0.14
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -1
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR 179
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 78 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPR 131
>BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 33.5 bits (73), Expect = 1.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -1
Query: 361 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 188
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 187 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
>AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 33.5 bits (73), Expect = 1.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -1
Query: 361 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 188
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 187 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
>AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent
mitochondrial RNA helicase protein.
Length = 786
Score = 33.5 bits (73), Expect = 1.0
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = -1
Query: 361 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 188
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 187 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,741,946
Number of Sequences: 237096
Number of extensions: 2624930
Number of successful extensions: 9210
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9197
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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