Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b07
(862 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070575-1|AAL48046.1| 532|Drosophila melanogaster RE12073p pro... 133 3e-31
AE014297-1620|AAN14341.1| 532|Drosophila melanogaster CG12360-P... 133 3e-31
AE014297-1619|AAF54893.1| 532|Drosophila melanogaster CG12360-P... 133 3e-31
AE014297-4379|AAF56893.2| 327|Drosophila melanogaster CG2006-PA... 30 3.6
>AY070575-1|AAL48046.1| 532|Drosophila melanogaster RE12073p
protein.
Length = 532
Score = 133 bits (322), Expect = 3e-31
Identities = 74/214 (34%), Positives = 126/214 (58%), Gaps = 8/214 (3%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC R+ +AK+ + K++ + + G+ +LL+ A IAK+LG+
Sbjct: 284 ELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGM 343
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ ++
Sbjct: 344 APGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIE 403
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RS 194
+ +E+ K + ++ +E+ + PAF VFV ERD L +SLQ +
Sbjct: 404 E--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQ 458
Query: 193 VENPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
V RV+GVVG+GH +GI K +G + + I +L
Sbjct: 459 VRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAIL 492
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 825 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVS 712
+ Q+LP + TLL + V L+GT HFS++S +DVS
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVS 270
>AE014297-1620|AAN14341.1| 532|Drosophila melanogaster CG12360-PB,
isoform B protein.
Length = 532
Score = 133 bits (322), Expect = 3e-31
Identities = 74/214 (34%), Positives = 126/214 (58%), Gaps = 8/214 (3%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC R+ +AK+ + K++ + + G+ +LL+ A IAK+LG+
Sbjct: 284 ELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGM 343
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ ++
Sbjct: 344 APGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIE 403
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RS 194
+ +E+ K + ++ +E+ + PAF VFV ERD L +SLQ +
Sbjct: 404 E--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQ 458
Query: 193 VENPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
V RV+GVVG+GH +GI K +G + + I +L
Sbjct: 459 VRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAIL 492
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 825 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVS 712
+ Q+LP + TLL + V L+GT HFS++S +DVS
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVS 270
>AE014297-1619|AAF54893.1| 532|Drosophila melanogaster CG12360-PA,
isoform A protein.
Length = 532
Score = 133 bits (322), Expect = 3e-31
Identities = 74/214 (34%), Positives = 126/214 (58%), Gaps = 8/214 (3%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC R+ +AK+ + K++ + + G+ +LL+ A IAK+LG+
Sbjct: 284 ELCPSRIHILKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGM 343
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFRRA+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ ++
Sbjct: 344 APGGEFRRAFEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIE 403
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RS 194
+ +E+ K + ++ +E+ + PAF VFV ERD L +SLQ +
Sbjct: 404 E--VEECKQSDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQ 458
Query: 193 VENPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 92
V RV+GVVG+GH +GI K +G + + I +L
Sbjct: 459 VRPVRVVGVVGIGHANGIAKMWGTVDPKKIPAIL 492
Score = 37.5 bits (83), Expect = 0.023
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 825 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVS 712
+ Q+LP + TLL + V L+GT HFS++S +DVS
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVS 270
>AE014297-4379|AAF56893.2| 327|Drosophila melanogaster CG2006-PA
protein.
Length = 327
Score = 30.3 bits (65), Expect = 3.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -3
Query: 794 HFCKMINKPRSFF-WVQCTSVNSLLKMFQRTLSPKSIIIGTRRKEVFGR 651
H C++ N+ R FF + C V L ++ R P + I +KE+ G+
Sbjct: 34 HNCRLCNRSRKFFCYSCCVPVGELEELLPRLELPLQVDIIKHKKEIDGK 82
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,897,084
Number of Sequences: 53049
Number of extensions: 794481
Number of successful extensions: 1874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1864
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4147514904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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