Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b07
(862 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 116 2e-26
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 116 2e-26
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 32 0.60
Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 29 3.2
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 29 4.3
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 28 7.4
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 28 7.4
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 28 7.4
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 116 bits (280), Expect = 2e-26
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC R+S +AK+ +S+K+ Q +K + G+LH +LL A + +EL +
Sbjct: 189 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 248
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ C++ LGDRPIQ+T+ RA SLS+++ + +H++ S+ + +
Sbjct: 249 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFSHREKIT 308
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--RSVENP-- 182
+E+ K ++ ++ E+ D P ++ +FV+ERD + ++L V SVE
Sbjct: 309 AEEVERCKQRDLLEQLLAEMADDFP---QLSQIFVEERDAYMTHALHMLVHRNSVEKRAQ 365
Query: 181 -------------RVLGVVGMGHVDGII 137
V+ VVG+GH GI+
Sbjct: 366 WLRGTTGQQFQPLTVVAVVGIGHTPGIV 393
Score = 32.7 bits (71), Expect = 0.35
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 771 ATVVLLGTVHFSKQSIEDVSENFVA 697
+T+ L+GT HFSK+S EDVS A
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRA 180
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 116 bits (280), Expect = 2e-26
Identities = 66/208 (31%), Positives = 111/208 (53%), Gaps = 17/208 (8%)
Frame = -1
Query: 709 ELCRQRVSXXXXXXXXXXXDAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGV 530
ELC R+S +AK+ +S+K+ Q +K + G+LH +LL A + +EL +
Sbjct: 187 ELCPSRISIISMDEARLLSEAKDLNSQKIIQTMKQNGAIQGILHVLLLSMSAHVTRELSM 246
Query: 529 APGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLD 350
APGGEFR A+ C++ LGDRPIQ+T+ RA SLS+++ + +H++ S+ + +
Sbjct: 247 APGGEFRAAHRAAVATENCRVVLGDRPIQVTLQRALASLSIWQKIRFFFHVAFSHREKIT 306
Query: 349 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--RSVENP-- 182
+E+ K ++ ++ E+ D P ++ +FV+ERD + ++L V SVE
Sbjct: 307 AEEVERCKQRDLLEQLLAEMADDFP---QLSQIFVEERDAYMTHALHMLVHRNSVEKRAQ 363
Query: 181 -------------RVLGVVGMGHVDGII 137
V+ VVG+GH GI+
Sbjct: 364 WLRGTTGQQFQPLTVVAVVGIGHTPGIV 391
Score = 32.7 bits (71), Expect = 0.35
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -2
Query: 771 ATVVLLGTVHFSKQSIEDVSENFVA 697
+T+ L+GT HFSK+S EDVS A
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRA 178
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 31.9 bits (69), Expect = 0.60
Identities = 22/78 (28%), Positives = 40/78 (51%)
Frame = -3
Query: 845 FYYERKVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGTRRK 666
FYYE + SI+ N+ HF +I+KP ++ +S+N ++ F S+ + K
Sbjct: 37 FYYEHYLSVASIFINIFHFLILIHKP-----LRSSSIN-IIMAFIAIFDICSMFY--KMK 88
Query: 665 EVFGRCKKF*FQKAKTSR 612
+V+GR ++ F S+
Sbjct: 89 QVYGRSIEYIFDPCLQSK 106
>Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical
protein W01B6.5 protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 409 VYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPA-FKKIFH--VFV-D 242
V+ G V++ I + +P D N + ++ ++QF ++ P+ +K+ VF D
Sbjct: 453 VFSFGCVIWEIYENGNQPHDGKNAQTIRNLT-KKNQFLKLTNSAPSELRKLIEERVFTSD 511
Query: 241 ERDKCLAYSLQECVRSVENPRV 176
++C ++ +C +E P V
Sbjct: 512 PENRCSMTTIVQCAEKIEKPPV 533
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 29.5 bits (63), Expect = 3.2
Identities = 27/104 (25%), Positives = 44/104 (42%)
Frame = -1
Query: 496 EMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKE 317
E++KI +L + + + + FQS S Y+L I N + D K KD
Sbjct: 204 ELRKILEAELDVEEEDGEQIVEHNFQSTSSYKLNIKTAAIHQVNHQESDHTRPNKSKDLR 263
Query: 316 FVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVEN 185
S+ + + +D+PA K + E D + Q RSV +
Sbjct: 264 --SSEDQVLTEDLPAASKTPPASISELDMGEQGAEQRVTRSVHS 305
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 382 HISTSNPKPLDKNNLEKYK---DKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 212
H N L+ +L ++K D V+ +FE++ F + HVFV E DK L +
Sbjct: 547 HYLIQNSDELESLHLNRFKSDDDMRCVKKRFEKVKCKKCQFFDLSHVFV-EGDKYLTFDR 605
Query: 211 QECVRSVENPRVLGVVGM 158
+ V+N L G+
Sbjct: 606 DSLISYVDNTIHLTSAGL 623
>AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical
protein T07D3.9a protein.
Length = 441
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 331 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 161
Y D ++VQ + I D +P K+ H + E + + SVENP VL VV
Sbjct: 357 YTDGKYVQVKVAATISDQHKLPELAKLNHPTLGEEARVNTNVFNFTMESVENPNVLRVVP 416
Query: 160 MGHV 149
+V
Sbjct: 417 KHYV 420
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Frame = -1
Query: 331 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 161
Y D +++Q + I D +P K+ H + + + + SVENP VL VV
Sbjct: 377 YTDGKYLQMKVAASISDQNKLPELAKLNHPTLGQEARVNTNVFNFTMESVENPNVLTVVP 436
Query: 160 MGHVDGIIKYYGK 122
+V I G+
Sbjct: 437 KHYVHAITYLEGR 449
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 815 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 675
+I +L+ F IN P S F+V + LL+ FQ++ K ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341
>Z68214-1|CAA92444.1| 846|Caenorhabditis elegans Hypothetical
protein C10C5.1 protein.
Length = 846
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 165 LAWVMWTELSSTMER*SKKTLFLCSCK*RIPPPPFYVPIIRKGLKFTFYFLLFSF 1
LA +MW+ + +++ R + LFL + YV I++ L + YFL F F
Sbjct: 173 LAAIMWSAIGNSLRRLTNFVLFLFTA---------YVGIVKPSLSNSIYFLAFLF 218
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 830 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 669
K +YP I+ H K+ N + FW +V+ KMF + KS II R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 830 KVMYPSIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLS-PKSIIIGTRR 669
K +YP I+ H K+ N + FW +V+ KMF + KS II R+
Sbjct: 363 KEVYPEIHDTSTHIRKIFNDEEAQFW---KTVDKAKKMFDSVAAESKSPIISGRK 414
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 815 SIYQNLLHFCKMINKPRSFFWVQCTSVNSLLKMFQRTLSPKSIIIGT 675
+I +L+ F IN P S F+V + LL+ FQ++ K ++GT
Sbjct: 298 AIQYSLIQFDNEINNPTSTFYV---IASKLLEEFQKSSDRKCKVVGT 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,020,508
Number of Sequences: 27780
Number of extensions: 433754
Number of successful extensions: 1200
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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