Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b07
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.90 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.4  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   8.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   8.4  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 418 SLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDV 278
           SL++   GQVL   S+  PKPL K       D +    +  + I DV
Sbjct: 15  SLTLGPAGQVLAGSSSPRPKPLLKKEYPLVMDTKLKIIEILQFILDV 61


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 78  IPPPPFYVPIIRKGLKFTF 22
           +PP    +P+I K L FTF
Sbjct: 286 LPPTSLVLPLIAKYLLFTF 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 78  IPPPPFYVPIIRKGLKFTFYFLLFS 4
           IPP    VP++ K L FT   +  S
Sbjct: 289 IPPTSLTVPLLGKYLLFTMVLVTLS 313


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 78  IPPPPFYVPIIRKGLKFTFYFLLFS 4
           IPP    VP++ K + FT     FS
Sbjct: 293 IPPTSLVVPLLGKFVLFTMILDTFS 317


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 557 IRFEQHGMEHTSYEILAF 610
           ++F++HG     YEIL F
Sbjct: 388 VKFDEHGDGLARYEILNF 405


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 78  IPPPPFYVPIIRKGLKFTFYFLLFS 4
           IPP    +P++ K L FT   +  S
Sbjct: 302 IPPTSLAIPLLGKYLLFTMILVTLS 326


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 557 IRFEQHGMEHTSYEILAF 610
           ++F++HG     YEIL F
Sbjct: 478 VKFDEHGDGLARYEILNF 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,979
Number of Sequences: 438
Number of extensions: 5463
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)