Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b06
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.7  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.7  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.5  
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    27   4.7  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   8.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   8.1  

>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 731  VLHKSRPVFNRYGCQHNIV-RILLRTKNIFDYIF--KLFTR*FHASNF 865
            V++ S  V N YGC+HN V    +  +  FD++     F+R  H  +F
Sbjct: 2032 VVNASSLVLNEYGCEHNTVWPPWVPFETTFDFVLTPAAFSRFLHRVSF 2079


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +2

Query: 680  SILFCNHPNFSF-----RMTSNVLHKSRPVFNRYGCQHNIVRILLRTKNI 814
            S++ C H + +F     R  +N   KS+ + N Y   H  +  LL  KN+
Sbjct: 1998 SLVTCQHSDNTFSTPACRFAANAELKSQTISNHYPFMHITISALLEVKNL 2047


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 236 SVVINFSDIIRVEDWLYLVPILICLNMLY 150
           S+ INFSD  R+ED L  +  ++ + M+Y
Sbjct: 738 SLNINFSDFFRIEDLLVSLSKILSVLMVY 766


>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKL 835
           P++  Y   H I+R+ L  +++ DY+ K+
Sbjct: 164 PIYEGYALPHAIMRLDLAGRDLTDYLMKI 192


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/33 (51%), Positives = 21/33 (63%)
 Frame = +1

Query: 154 SIFKQIKIGTRYSQSSTLMMSEKFITTLARSES 252
           S FK+ K   RYS+SSTL++ E  I  LA S S
Sbjct: 369 SPFKKPK--RRYSKSSTLVLPETNIRKLANSYS 399


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +2

Query: 680 SILFCNHPNFSFRMTSNVLHKSRPVFNRYGCQHNIVRIL--LRTKNI 814
           ++  C+ P  +FR T+  L+   PVFNRY  +  ++R +  L++K++
Sbjct: 518 NLSICSLPE-NFRRTT--LYLQHPVFNRYHSETELMRYIHHLQSKDL 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,155
Number of Sequences: 5004
Number of extensions: 59126
Number of successful extensions: 141
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)