Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b06
         (879 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005102-1|AAH05102.1|  190|Homo sapiens chromosome 1 open readi...    53   1e-06
AL122003-5|CAI22244.1|  190|Homo sapiens chromosome 1 open readi...    53   1e-06
AF416713-1|AAL16807.1|  190|Homo sapiens unknown protein.              53   1e-06
AL122003-4|CAI22243.1|  228|Homo sapiens chromosome 1 open readi...    38   0.036

>BC005102-1|AAH05102.1|  190|Homo sapiens chromosome 1 open reading
           frame 57 protein.
          Length = 190

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -3

Query: 874 VIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRS--ALVENIRSHPKAKVW 701
           VIDEIG MEL S+ F   +    S+      ++L TIPV      ALVE IR+    KV+
Sbjct: 111 VIDEIGKMELFSQLFIQAVRQTLSTPGT---IILGTIPVPKGKPLALVEEIRNRKDVKVF 167

Query: 700 VITKKNRNKLHEEVINEMKS 641
            +TK+NRN L  +++  ++S
Sbjct: 168 NVTKENRNHLLPDIVTCVQS 187


>AL122003-5|CAI22244.1|  190|Homo sapiens chromosome 1 open reading
           frame 57 protein.
          Length = 190

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -3

Query: 874 VIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRS--ALVENIRSHPKAKVW 701
           VIDEIG MEL S+ F   +    S+      ++L TIPV      ALVE IR+    KV+
Sbjct: 111 VIDEIGKMELFSQLFIQAVRQTLSTPGT---IILGTIPVPKGKPLALVEEIRNRKDVKVF 167

Query: 700 VITKKNRNKLHEEVINEMKS 641
            +TK+NRN L  +++  ++S
Sbjct: 168 NVTKENRNHLLPDIVTCVQS 187


>AF416713-1|AAL16807.1|  190|Homo sapiens unknown protein.
          Length = 190

 Score = 53.2 bits (122), Expect = 1e-06
 Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
 Frame = -3

Query: 874 VIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRS--ALVENIRSHPKAKVW 701
           VIDEIG MEL S+ F   +    S+      ++L TIPV      ALVE IR+    KV+
Sbjct: 111 VIDEIGKMELFSQLFIQAVRQTLSTPGT---IILGTIPVPKGKPLALVEEIRNRKDVKVF 167

Query: 700 VITKKNRNKLHEEVINEMKS 641
            +TK+NRN L  +++  ++S
Sbjct: 168 NVTKENRNHLLPDIVTCVQS 187


>AL122003-4|CAI22243.1|  228|Homo sapiens chromosome 1 open reading
           frame 57 protein.
          Length = 228

 Score = 38.3 bits (85), Expect = 0.036
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -3

Query: 874 VIDEIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRS--ALVENIRSHPKAKVW 701
           VIDEIG MEL S+ F   +    S+      ++L TIPV      ALVE IR+    KV+
Sbjct: 111 VIDEIGKMELFSQLFIQAVRQTLSTPG---TIILGTIPVPKGKPLALVEEIRNRKDVKVF 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,811,103
Number of Sequences: 237096
Number of extensions: 1771246
Number of successful extensions: 3365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3362
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)