Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b06
(879 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 31 1.4
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 31 1.4
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 31 1.4
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 31 1.4
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 31 1.4
Z95392-2|CAK55178.1| 356|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z95392-1|CAB08740.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z73098-14|CAK55194.1| 356|Caenorhabditis elegans Hypothetical p... 30 1.9
AL023829-2|CAK55191.1| 356|Caenorhabditis elegans Hypothetical ... 30 1.9
AL023829-1|CAA19471.1| 342|Caenorhabditis elegans Hypothetical ... 30 1.9
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 30 2.5
AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 29 5.8
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 29 5.8
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 29 5.8
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 29 5.8
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 29 5.8
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 29 5.8
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 29 5.8
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 29 5.8
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 29 5.8
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 5559 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 5603
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 6088 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 6132
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 5769 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 5813
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 5559 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 5603
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 6088 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 6132
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 5769 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 5813
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 835 KFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAKVW 701
+++ V+EN S+ + NV +A +P R ++ENI W
Sbjct: 4978 EYRVVVENSVGSDSGTVNVTVADVPEPPRFPIIENILDEAVILSW 5022
>Z95392-2|CAK55178.1| 356|Caenorhabditis elegans Hypothetical
protein H27A22.1b protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 814 NIFSSEQNSYNVVLAT-IPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEEVINEMKSV 638
N+F+ +Q SYN V IP R + ++ + P VW + N N LH I+ M +V
Sbjct: 284 NVFN-KQLSYNQVEDDHIPFLKRGVPILHLITVPFPSVWHRSSDNANALHYPTIDHMTAV 342
Query: 637 L 635
+
Sbjct: 343 I 343
>Z95392-1|CAB08740.1| 342|Caenorhabditis elegans Hypothetical
protein H27A22.1a protein.
Length = 342
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 814 NIFSSEQNSYNVVLAT-IPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEEVINEMKSV 638
N+F+ +Q SYN V IP R + ++ + P VW + N N LH I+ M +V
Sbjct: 270 NVFN-KQLSYNQVEDDHIPFLKRGVPILHLITVPFPSVWHRSSDNANALHYPTIDHMTAV 328
Query: 637 L 635
+
Sbjct: 329 I 329
>Z73098-14|CAK55194.1| 356|Caenorhabditis elegans Hypothetical
protein H27A22.1b protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 814 NIFSSEQNSYNVVLAT-IPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEEVINEMKSV 638
N+F+ +Q SYN V IP R + ++ + P VW + N N LH I+ M +V
Sbjct: 284 NVFN-KQLSYNQVEDDHIPFLKRGVPILHLITVPFPSVWHRSSDNANALHYPTIDHMTAV 342
Query: 637 L 635
+
Sbjct: 343 I 343
>AL023829-2|CAK55191.1| 356|Caenorhabditis elegans Hypothetical
protein H27A22.1b protein.
Length = 356
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 814 NIFSSEQNSYNVVLAT-IPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEEVINEMKSV 638
N+F+ +Q SYN V IP R + ++ + P VW + N N LH I+ M +V
Sbjct: 284 NVFN-KQLSYNQVEDDHIPFLKRGVPILHLITVPFPSVWHRSSDNANALHYPTIDHMTAV 342
Query: 637 L 635
+
Sbjct: 343 I 343
>AL023829-1|CAA19471.1| 342|Caenorhabditis elegans Hypothetical
protein H27A22.1a protein.
Length = 342
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 814 NIFSSEQNSYNVVLAT-IPVKNRSALVENIRSHPKAKVWVITKKNRNKLHEEVINEMKSV 638
N+F+ +Q SYN V IP R + ++ + P VW + N N LH I+ M +V
Sbjct: 270 NVFN-KQLSYNQVEDDHIPFLKRGVPILHLITVPFPSVWHRSSDNANALHYPTIDHMTAV 328
Query: 637 L 635
+
Sbjct: 329 I 329
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 209 IRVEDWLYLVPILICLNMLYDQF*RTKLAIIWL 111
+R+ DW+Y+ P+ + LN YD F + ++W+
Sbjct: 324 LRLWDWIYVGPLALMLNQYYD-FVFDEYVLLWI 355
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 209 IRVEDWLYLVPILICLNMLYDQF*RTKLAIIWL 111
+R+ DW+Y+ P+ + LN YD F + ++W+
Sbjct: 324 LRLWDWIYVGPLALMLNQYYD-FVFDEYVLLWI 355
>AF016669-2|AAB66099.2| 455|Caenorhabditis elegans Hypothetical
protein K10G6.4 protein.
Length = 455
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 865 EIGSMELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALVENIRSHPKAK 707
+I +E + K K IE I S +N VV+ T+ +KN L EN+ K +
Sbjct: 230 QISQLEDTVKSLKLHIEKIAS--ENDQTVVVETLRLKNEELLKENLNLEMKQR 280
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 121 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 151
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 151 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 181
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 28.7 bits (61), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 749 PVFNRYGCQHNIVRILLRTKNIFDYIFKLFT 841
P++ Y H I+R+ L +++ DY+ K+ T
Sbjct: 165 PIYEGYALPHAILRLDLAGRDLTDYLMKILT 195
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,014,625
Number of Sequences: 27780
Number of extensions: 318548
Number of successful extensions: 832
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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