Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b06
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   6.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   8.6  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 172 KIGTRYSQSSTLMMSEKF 225
           ++GT+Y +S  LM  E+F
Sbjct: 200 RVGTKYHRSGGLMNVERF 217


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 853 MELSSKKFKNVIENIFSSEQNSYNVVLATIPVKNRSALV 737
           +E   KKF  V EN   +E+N+ ++V A +       L+
Sbjct: 63  VECMMKKFNVVDENGNFNEKNTRDIVQAVLDDNETDQLI 101


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -3

Query: 835 KFKNVIENIFSSEQNSYNVVLA-TIPVKNRSALVENIRSHPK 713
           K KN+ EN F      + + +  T+P++    L+EN+R+HP+
Sbjct: 312 KAKNM-ENRFPLFTTVHRICIGETMPME----LIENLRNHPE 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,931
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)