Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte16b05
(842 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 118 8e-27
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 36 0.040
03_05_1105 + 30438140-30438350,30438448-30438926 33 0.22
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 31 0.87
03_01_0560 + 4162206-4162607 30 2.0
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 30 2.0
01_01_0032 - 247971-248107,248369-248468,248861-248959,249617-24... 29 6.1
05_07_0084 - 27587307-27589175 28 8.1
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 118 bits (283), Expect = 8e-27
Identities = 64/208 (30%), Positives = 112/208 (53%), Gaps = 1/208 (0%)
Frame = -2
Query: 778 RLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQAGFLSAIVGAGLMLMLIATPDNG 599
++ P V+ HLK VY TL + +++ G Y+ + G L+ + G + L + P
Sbjct: 28 QISPAVQSHLKLVYLTLCVALAASAVGAYLHVALNI-GGMLTMLGCVGSIAWLFSVPVFE 86
Query: 598 KNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSIIITALLGTTLVFVCFSAAAMLAERG 419
+ R G LL L G S+GPL++ D SI++TA +GT + F CF+ AA++A+R
Sbjct: 87 ERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRR 144
Query: 418 SWXXXXXXXXXXXTSMS-LMTLVNLFMQSHFLYQAHLYLGLMLMCGFVLFDTQLIIEKRR 242
+ + + L ++F S + +Y GL++ G++++DTQ IIE+
Sbjct: 145 EYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAH 204
Query: 241 MGSKDFVQHALELFIDFIGMFRRLVIIL 158
G D+++HAL LF DF+ + R+++I+
Sbjct: 205 HGDMDYIKHALTLFTDFVAVLVRILVIM 232
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 35.9 bits (79), Expect = 0.040
Identities = 14/57 (24%), Positives = 35/57 (61%)
Frame = -2
Query: 307 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVIILTQKEEQN 137
LG ++ GF+++DT+ +I +R D++ ++EL++D + +F ++ ++ + N
Sbjct: 212 LGALVFSGFIIYDTENLI--KRHTYDDYIWASVELYLDILNLFLYILNMIRSMQSDN 266
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 33.5 bits (73), Expect = 0.22
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = -2
Query: 307 LGLMLMCGFVLFDTQLIIEKRRMGSKDFVQHALELFIDFIGMFRRLVII 161
L ++ CG++++DT +I +R ++V A+ L++D I +F L+ +
Sbjct: 177 LAALVFCGYIVYDTDNLI--KRYSYDEYVWAAVALYLDVINLFLSLLTL 223
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 31.5 bits (68), Expect = 0.87
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = -2
Query: 667 AGFLSAIVGAGLMLMLIATPD-NGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPSII 491
AG LS++ AG L + ++ T+ +G ++GFG+ G ++ V S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281
Query: 490 ITALLGTTLVFVCF 449
I+ L+G + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295
>03_01_0560 + 4162206-4162607
Length = 133
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -2
Query: 682 FTRFQAGFLSAIVGAGLMLMLIATPDNGKNTNLRLGYLLGFGLTSGMSMG 533
F F G A+ A L L+L+A D + G+L G LT S+G
Sbjct: 58 FLSFTIGTALALAAAYLALLLLAATDKMLGADAVTGFLWGADLTGAASLG 107
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +3
Query: 423 RSASIAAAEKHTNTRVVPSRAVIMID------GSTTLTYSSRGPMLMPDVNPNPSR*PSR 584
R++++ ++EK + VP +++ G T + SS GP D+N P+R P +
Sbjct: 37 RTSAVVSSEKESANSFVPHNGTGLVERISNDAGLTEVVGSSAGPTECIDLNKTPARKPKK 96
Query: 585 K 587
K
Sbjct: 97 K 97
>01_01_0032 -
247971-248107,248369-248468,248861-248959,249617-249781,
249860-249940,250316-250384,250695-250790,252232-252282,
253361-253419,254255-254324,254325-254553,254674-255098,
255361-255441
Length = 553
Score = 28.7 bits (61), Expect = 6.1
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 820 NTINFQPFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDM-FTRFQAGFLSAI 647
N ++ + + +N+ +Q +K + A+L TC S S Y D+ R+ +SAI
Sbjct: 422 NNVHALDQLRTIKNKANSTSQQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAI 480
>05_07_0084 - 27587307-27589175
Length = 622
Score = 28.3 bits (60), Expect = 8.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 402 PRNSQL-PRSASIAAAEKHTNTRVVPSRAVIMIDGSTTLTYSSRG 533
P S+ P +AS A H+ + V+P V++ G+T Y+ G
Sbjct: 446 PEGSRFRPLAASTVARMYHSTSAVLPDATVLVAGGNTNAAYNFSG 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,866,369
Number of Sequences: 37544
Number of extensions: 470796
Number of successful extensions: 1037
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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