Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b04
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    31   0.22 
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc...    29   0.66 
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   2.0  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    27   4.7  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    27   4.7  
SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   6.2  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    26   6.2  

>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = -1

Query: 152 ANIPTRETLP--YVIVLYVVSC*GGRKVVRYQVPTERRVRPPPGRKDATRVG 3
           A++ +  T+P  Y+ + Y VSC    +VVR +    RR+R PP R    R G
Sbjct: 56  ASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRSREGRRIRTPPPRVRYNRDG 107


>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 120

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -1

Query: 122 YVIVLYVVSC*GGRKVVRYQVPTERRVRPPPGRKDATRVG 3
           YV + Y VSC    +VVR +    RR+R PP R    R G
Sbjct: 68  YVKLQYCVSCAIHARVVRVRSREGRRIRTPPPRVRYNRDG 107


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 428 LSYHSSNYHFSRRYDLVVESSGLSCQVNC 514
           L Y  S Y  SR+Y+  +    LS Q+NC
Sbjct: 442 LDYIQSTYVSSRQYNKEINEKTLSLQINC 470


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 15  RVLAARRRAHPPLCWHLISNNLSPSLTTY-NVQHYNIWQRLAR 140
           R+L+A  + HP  C H+I + L    +   N  H    +RLA+
Sbjct: 703 RLLSALYKFHPEFCIHVIDDTLESLFSAVNNSDHVEKQKRLAQ 745


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 135 ARRNVCGHRHGRLYAAGVSYSCRAVAAVCSAGLHVQ*YGLHRSYLKL 275
           A  NV GH+H  L AA ++Y   +   +  A LH     +H +  K+
Sbjct: 312 ATENVDGHKHLLLRAANIAYHYFSFDFLQKASLHSSTLPIHLACKKI 358


>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 155 SANIPTRETLPYVIVLYVVSC*GGRKVVRYQVPTER 48
           + N+P R    +   LY+    GGR V++Y   TE+
Sbjct: 129 TCNVPQRRLNRFFQTLYISMKRGGRAVMQYYPETEK 164


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 777 YTQKRNFTQSGFNSHSFFIQKAPT 706
           YT + NF  +GF+S+  F    PT
Sbjct: 138 YTMRTNFFSNGFSSNDLFPHSFPT 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,608
Number of Sequences: 5004
Number of extensions: 65913
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)