Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b04
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483...    30   2.8  
01_01_0854 + 6662533-6662652,6662727-6662996,6663118-6663171,666...    29   3.7  
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752...    29   6.5  
08_02_0947 + 22897552-22897614,22898291-22898513,22898599-228988...    29   6.5  

>09_04_0563 +
           18546967-18547407,18547503-18548007,18548271-18548314,
           18548639-18548734,18548830-18549340,18549506-18549540
          Length = 543

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 281 LTPYL*TNYLAVTQCSVYCSTVCPGGQSGGHEPARSLRRLLA 406
           L   L   YLAV    V C+ +C     GGH  AR++  +LA
Sbjct: 37  LRSLLANKYLAVASGPVACALICGLVDLGGHRAARNMLGVLA 78


>01_01_0854 +
           6662533-6662652,6662727-6662996,6663118-6663171,
           6663723-6663784,6663940-6664008,6664082-6664133,
           6664287-6664460
          Length = 266

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 114 SVVRCKLLRREKGCSISGANREEGAPAAGPQGRDPGRA 1
           SVV C   R  +   ++ A+ EEG P    QGR  GRA
Sbjct: 40  SVVSCLPKRGSEKLVVTRASDEEGPPEPAGQGRGGGRA 77


>12_01_0818 +
           7524549-7524747,7524855-7525863,7525964-7526108,
           7526206-7526295,7526404-7526553,7527333-7528094,
           7528177-7528496,7528581-7528707,7528792-7528959,
           7529054-7530466,7530563-7530823,7530983-7531144,
           7531976-7532121,7532601-7532667,7533483-7533587
          Length = 1707

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 337 LDCVPGGTVRGTRTSAEPQTVARSASSRHI 426
           L+ +  G   GTRTS + Q +  S SS+HI
Sbjct: 721 LETISDGISTGTRTSLDSQNILISMSSQHI 750


>08_02_0947 +
           22897552-22897614,22898291-22898513,22898599-22898892,
           22899346-22900598
          Length = 610

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 242 IIWLTSIVLKTTWLTPYL*TNYLAVTQCSVYCSTVCPGG 358
           IIW T +VL   +L P+L    L  T  S  C+ +  GG
Sbjct: 355 IIWGTHVVLVALYLVPFL---LLEATYVSAVCTKILRGG 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,754,473
Number of Sequences: 37544
Number of extensions: 464019
Number of successful extensions: 1327
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1326
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)