Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b04
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...    33   0.27 
Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL032648-5|CAA21698.1|  343|Caenorhabditis elegans Hypothetical ...    28   7.7  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 378  GSCPPDCPPGHTVEQYTEHCVT 313
            G C  +CPPGH  +  T  CVT
Sbjct: 984  GECKDNCPPGHQYDSLTSDCVT 1005


>Z68298-8|CAA92605.3|  449|Caenorhabditis elegans Hypothetical
           protein F44D12.9 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 21/68 (30%), Positives = 36/68 (52%)
 Frame = +3

Query: 447 ITILVGVMIL*WSRVVYRVK*IVNCVLSAIARYLFCFYSKQATSIRTSYAVSYPMVQFIF 626
           I ++VG M+L   RVV  V  IVNC+L  +   L  F +    S+   Y V+  ++  + 
Sbjct: 101 IVVMVGFMML---RVV--VPLIVNCILIGVIVILAIFVTPSPDSVTWFYIVT--LIIIMA 153

Query: 627 LNIGNVLF 650
           +N+ N ++
Sbjct: 154 MNLANGIY 161


>AL032648-5|CAA21698.1|  343|Caenorhabditis elegans Hypothetical
           protein Y54G9A.6 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 106 YNTITYGNVSRVGMFADIGTGGSTRPGSATVA 201
           YN + +G V      ADI TG  T+ GS  +A
Sbjct: 80  YNKVAFGGVDHNVKLADIETGNGTQLGSHALA 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,457,913
Number of Sequences: 27780
Number of extensions: 401308
Number of successful extensions: 1070
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)