Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b01
         (813 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76069-1|AAD14208.1|  261|Homo sapiens CNG3 protein.                   31   5.0  
BC096300-1|AAH96300.1|  694|Homo sapiens cyclic nucleotide gated...    31   5.0  
BC096299-1|AAH96299.1|  676|Homo sapiens cyclic nucleotide gated...    31   5.0  
BC096298-1|AAH96298.1|  694|Homo sapiens cyclic nucleotide gated...    31   5.0  
AK131300-1|BAD18468.1|  698|Homo sapiens mRNA.  protein.               31   5.0  
AF065314-1|AAC17440.1|  694|Homo sapiens cone photoreceptor cGMP...    31   5.0  
AC092675-2|AAY24181.1|  694|Homo sapiens unknown protein.              31   5.0  

>S76069-1|AAD14208.1|  261|Homo sapiens CNG3 protein.
          Length = 261

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 1   IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 44


>BC096300-1|AAH96300.1|  694|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 694

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 320 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 363


>BC096299-1|AAH96299.1|  676|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 676

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 302 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 345


>BC096298-1|AAH96298.1|  694|Homo sapiens cyclic nucleotide gated
           channel alpha 3 protein.
          Length = 694

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 320 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 363


>AK131300-1|BAD18468.1|  698|Homo sapiens mRNA.  protein.
          Length = 698

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 324 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 367


>AF065314-1|AAC17440.1|  694|Homo sapiens cone photoreceptor
           cGMP-gated channel alpha subunit protein.
          Length = 694

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 320 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 363


>AC092675-2|AAY24181.1|  694|Homo sapiens unknown protein.
          Length = 694

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 59  LFYHRPKFFGFSSXRNLTPSISLSLH*NMTRKYLLSNSYKSLIL 190
           +++   KF GF +   + P+IS+  H  ++RKY+ S  + +L L
Sbjct: 320 IYFAISKFIGFGTDSWVYPNISIPEHGRLSRKYIYSLYWSTLTL 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,616,951
Number of Sequences: 237096
Number of extensions: 2117172
Number of successful extensions: 7400
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7400
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)