Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b01
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77663-4|CAB01213.1|  605|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical ...    28   9.1  
AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical...    28   9.1  

>Z77663-4|CAB01213.1|  605|Caenorhabditis elegans Hypothetical
           protein F53F4.4 protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 203 EDSFVKLKICKNLRGDTFSSCFSVMTAIWTVLNFXERKNRKIL 75
           ED  VK KIC+ +   T  SC + +  +WT +    RK+ +++
Sbjct: 470 EDLEVKPKICEGIVKTTALSCLAPLLRLWTGIK-ENRKDTEVV 511


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = +1

Query: 82  FRFFLSXKFNTVHIAVITLKHDEKVSP-LKFLQIFNFTKLSSY*IFHENTKTINHN 246
           F F  +   N   +A+   +    V P L  L+IFN+T   ++  F  N ++IN N
Sbjct: 765 FDFKFNSTINGASLAITRTRKGTTVLPTLDILEIFNYTTPPNFRSFRLNGQSINVN 820


>U41993-4|AAA83446.4|  574|Caenorhabditis elegans Hypothetical
           protein F44A2.3 protein.
          Length = 574

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 668 LSSHVHTISNAHFSTSLSQVPRS 600
           +  H++ ++  HFST L+++PRS
Sbjct: 200 ICEHMNRLTQQHFSTRLARIPRS 222


>AL031629-6|CAA20980.2|  948|Caenorhabditis elegans Hypothetical
           protein Y106G6D.7 protein.
          Length = 948

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 385 NKIASKIGYK-KFKCQSSNALQNCNKSAYSYAKFNKTIRNR*SNNIELK 528
           N  A+K GY+  +  Q+SNA +    +  SY+   +  +N   N+++LK
Sbjct: 122 NPYAAKAGYEASYPPQNSNATRTSFNNQNSYSNRQEISQNHQENSVKLK 170


>AC025726-25|AAK73927.2|  409|Caenorhabditis elegans Hypothetical
           protein Y71G12B.26 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 781 FLHISSFKQFIHFFLGLPLPLYPSTFMVNILTN 683
           +L+++ F   IH F+G+P+ +  +T  +  L++
Sbjct: 295 YLYLAVFHDLIHLFIGMPVQVAAATICIGELSS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,189,719
Number of Sequences: 27780
Number of extensions: 381411
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)