Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16b01
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 359 QSTYTTLEMESLRHNACK*KCQYFHITSSGS 267
           +S    +E+  L H  CK   +  H TSS S
Sbjct: 389 KSKMEVMELSDLHHPNCKINRKVHHTTSSSS 419


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 396 RNLVNCLQFIMTSKYLHYIRNGESETQCLQMKMPIFSHYKQRLKSTDQ 253
           RNL N L+ I   KY+ Y   G  E +   ++   +++    L  TDQ
Sbjct: 23  RNLTNSLKVIYEWKYIDY-DFGSDEKRQAAIQSGDYNYTMNYLLDTDQ 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,413
Number of Sequences: 438
Number of extensions: 5004
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)