Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a23
         (363 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   1.2  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    25   2.7  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   2.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   2.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   3.6  
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    25   4.8  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   4.8  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    24   6.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    24   6.3  

>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -2

Query: 188 GFVQQDYNEWNANTALWML 132
           GF Q D N+W  N   W L
Sbjct: 206 GFAQNDGNDWKINRVTWRL 224


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 62  DVEAHSHGLKPSHTLKSRIKQHI 130
           D+  H HG +PSH +K    QHI
Sbjct: 225 DLMGHDHGERPSH-VKDASAQHI 246


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 167 CSPVEQSQALWSISLSVFRCCSYLQEYKMSLLLYF 271
           C P+E S A WS   S+F C S      ++++ +F
Sbjct: 477 CVPIEGSSASWSKQPSLF-CASGTMLISLAVIAWF 510


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 293 YLIYLATQNIAAMTSYTPEDMNNIETPKEKCSIELGFVQQDYNE 162
           YL+ +   +I  + S+ P ++NNI         + G +++D N+
Sbjct: 96  YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVFDDGDIEEDMNK 139


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 3.6
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 23   TIDNTHACYGAKADVEAHSHGLKPSHTLKSRIKQHIPTSTEP 148
            TI  TH  Y    + E       PS T  S++  H PT T+P
Sbjct: 1008 TITGTHDVYRQTDNPEIKL----PSDTASSKVDTHNPTVTQP 1045


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 4   IYRSGCDH*QYPCLLRSESRRRSTQPRVK 90
           +  SG D    PCLLRS+ +R    P  K
Sbjct: 428 VTNSGKDANIIPCLLRSKHKRDKANPENK 456


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 227 CSYLQEYKMSLLLYFV*PNKLNKLNFISSNQINFDI 334
           C+ + +++  LL Y    NKL+K N  ++ Q+ FDI
Sbjct: 160 CALIHQHRPDLLDY----NKLDKKNHRANMQLAFDI 191


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 34  YPCLLRSESRRRSTQPRVKTITYVKIQNKT 123
           YP L+ SE+R  S QP  + +T   +   T
Sbjct: 704 YPPLIPSEARTPSVQPANRRVTTPVVNQNT 733


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 6.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 293 YLIYLATQNIAAMTSYTPEDMNNIET 216
           Y++    Q+   +T+  P+DM+N+ T
Sbjct: 672 YIVQRTQQSANPLTNIEPQDMSNLST 697


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,403
Number of Sequences: 5004
Number of extensions: 31354
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)