Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte16a23
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z81112-5|CAB03276.1|  245|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z81027-4|CAB02689.1|  245|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    26   7.0  
Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical pr...    26   9.3  
AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical ...    26   9.3  

>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 203 CSIELGFVQQDYNEWNANTALWMLVY--AVLFWILTYVMVL 87
           C I +       + W A T   +L+Y  A+LF++ TY+M++
Sbjct: 79  CLISISSAWSSPDLWLAETIFSLLMYLIAILFFMYTYLMII 119


>Z81112-5|CAB03276.1|  245|Caenorhabditis elegans Hypothetical
           protein AH10.2 protein.
          Length = 245

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 21/74 (28%), Positives = 29/74 (39%)
 Frame = +2

Query: 5   FTDLVVTIDNTHACYGAKADVEAHSHGLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 184
           F+D V+ + +   C       +        S T+ S     I TST      I+  P E 
Sbjct: 99  FSDAVLLVQSVFKCDTGFVGDKCQDIITSTSTTVISTTTTEIKTSTTKVIIVINDVPKEA 158

Query: 185 SQALWSISLSVFRC 226
           S    SISL+V  C
Sbjct: 159 SALQQSISLNVIHC 172


>Z81027-4|CAB02689.1|  245|Caenorhabditis elegans Hypothetical
           protein AH10.2 protein.
          Length = 245

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 21/74 (28%), Positives = 29/74 (39%)
 Frame = +2

Query: 5   FTDLVVTIDNTHACYGAKADVEAHSHGLKPSHTLKSRIKQHIPTSTEPYWRSIHCSPVEQ 184
           F+D V+ + +   C       +        S T+ S     I TST      I+  P E 
Sbjct: 99  FSDAVLLVQSVFKCDTGFVGDKCQDIITSTSTTVISTTTTEIKTSTTKVIIVINDVPKEA 158

Query: 185 SQALWSISLSVFRC 226
           S    SISL+V  C
Sbjct: 159 SALQQSISLNVIHC 172


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 120 NSIYQHPQSRIGVPFIVVLLNKAKLYGAFLFRCFDV 227
           NS YQHP+ +   P   +L+N     G   F   DV
Sbjct: 482 NSTYQHPKKKEKSPKNAILINLKNTLGGEKFTVEDV 517


>Z82060-9|CAJ85764.1|  166|Caenorhabditis elegans Hypothetical
           protein T27F6.5c protein.
          Length = 166

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 HPQSRIGVPFIVVLLNKAK 191
           H  +R+G+PFI+V+ N+ +
Sbjct: 81  HDANRLGIPFILVIANETE 99


>Z82060-8|CAJ85763.1|  114|Caenorhabditis elegans Hypothetical
           protein T27F6.5b protein.
          Length = 114

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 HPQSRIGVPFIVVLLNKAK 191
           H  +R+G+PFI+V+ N+ +
Sbjct: 29  HDANRLGIPFILVIANETE 47


>Z82060-7|CAB04884.1|  454|Caenorhabditis elegans Hypothetical
           protein T27F6.5a protein.
          Length = 454

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 HPQSRIGVPFIVVLLNKAK 191
           H  +R+G+PFI+V+ N+ +
Sbjct: 369 HDANRLGIPFILVIANETE 387


>Z71258-2|CAA95781.2|  668|Caenorhabditis elegans Hypothetical
           protein C01H6.2 protein.
          Length = 668

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 281 LATQNIAAMTSYTPEDMNNIE 219
           L  +++ AM SYTPE+M  IE
Sbjct: 637 LQQKDLEAMNSYTPENMKLIE 657


>AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical
           protein Y37E3.3 protein.
          Length = 67

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 209 EKCSIELGFVQQDYNEWNANTALWMLVYAVLFWILTYVMVLTR 81
           +K    LGF+Q +Y+E +A  AL +  Y     +L +V ++ +
Sbjct: 16  DKWETYLGFLQSEYSEGDALDALGLRRYCCRRMLLAHVDLIEK 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,675,591
Number of Sequences: 27780
Number of extensions: 172384
Number of successful extensions: 629
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)